Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1047
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              30   1.2  
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   3.6  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 83  YVYMKCYCHKFCLFFIYTYLVF 148
           Y Y  CYC+ +C ++ Y Y  +
Sbjct: 477 YYYCYCYCYYYCYYYCYCYCYY 498



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 80  KYVYMKCYCHKFCLFFIYTYLVFF 151
           +Y Y  CYC+ +C  + Y Y  ++
Sbjct: 468 RYCYCYCYCYYYCYCYCYYYCYYY 491


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 104 CHKFCLFFIYTYLVFFDCMIISNNKKYRIKLLPIF 208
           C     +F YTY+V  + + I +  +YR +L   F
Sbjct: 584 CSNIVYYFTYTYVVLDEALDIGHGSRYRPRLRQFF 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,530
Number of Sequences: 59808
Number of extensions: 227147
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)