Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1047
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 359 LYWTILLS*IYFYTSIL 409
           +YW  L+  IY YTSIL
Sbjct: 212 MYWFPLVVIIYTYTSIL 228



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 485 YLTMYVFYIMASDKYYYII 429
           YL+ +V   ++ D+YY +I
Sbjct: 123 YLSSFVLVCISMDRYYAVI 141


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 FCLFFIYTYLVFFDCMIIS 169
           FCL F    L+FF+C+ IS
Sbjct: 453 FCLLF----LMFFECIAIS 467


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 FCLFFIYTYLVFFDCMIIS 169
           FCL F    L+FF+C+ IS
Sbjct: 506 FCLLF----LMFFECIAIS 520


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 169 EQQKIPNKITANI 207
           EQQKIP ++TA I
Sbjct: 531 EQQKIPLRMTAGI 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,030
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)