Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1046
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    28   0.94 
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   6.6  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   6.6  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    25   6.6  

>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 315 NNINGWKR-LGLRVYKTTF*FSFKASYTYEHCKSH 214
           N I G+++ LGLRV+ ++   S     TYEH KSH
Sbjct: 213 NGIFGFEKGLGLRVFASSLGLSIYLG-TYEHVKSH 246


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 188 RFYTNLKKCQEKYNFPSGRIYNMDET 111
           R +   ++ QEK  F S R YN D T
Sbjct: 32  RLFKTTQELQEKVKFSSSRFYNKDST 57


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 185 FYTNLKKCQEKYNFPSGRIY 126
           F  NLK C    NFP+G  Y
Sbjct: 116 FLCNLKNCLIDNNFPTGNFY 135


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 119 PYYIFDLKGSYIFLDTFSSLYKIYL 193
           PY I  L G ++FL  + SLY   L
Sbjct: 432 PYIIILLNGVFLFLQGYKSLYPFRL 456


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = -3

Query: 353 FAEANEIENRFNKTT*MAGKDWVYEFIKRHSDLALKQATPTSIARAIGFNQVQVNRFYTN 174
           FA+A     R NK    AG+D V E  +    + L   TP ++ +A+  +       +++
Sbjct: 214 FADAAVDGKRTNKGLSPAGRDIVREMNRLGMIVDLSHTTPETMHQALDVSVAPAFFSHSS 273

Query: 173 LKKCQE-KYNFPSGRIYNMDETGIVTVPKKTHKVISPKGKKKLIKLFLEN 27
            K   +   N P   +  + ET  V +       ISP  +   I   +E+
Sbjct: 274 AKGVYDHPRNVPDDVLIRVKETDGVVMVNFYPAFISPHPENATIDTVVEH 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,752
Number of Sequences: 5004
Number of extensions: 56705
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)