Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1046
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)                    33   0.25 
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)                      32   0.32 
SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               28   5.3  

>SB_17970| Best HMM Match : DUF273 (HMM E-Value=7.5)
          Length = 271

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 272 KRHSDLALKQATPTSIARAIGFNQVQVNRFYTNLKKCQ-EKYNFPSGRIYNMDETGIVTV 96
           K+H  LA     P+S +R+      Q  + Y  +   Q EKY F + R   M ++G+V  
Sbjct: 171 KQHESLADSLLNPSSASRS---RHCQHGQTYEAIALRQYEKYMFSTRRPVKMFKSGLVVT 227

Query: 95  PKKTHKVISPKGKKKLIKLFLENP 24
               H    P+   KL+ L + NP
Sbjct: 228 VVLKHLSSEPQLMAKLLTLAVRNP 251


>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
          Length = 1702

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 254  ALKQATPTSIARAIGFNQVQVNRFYTNLKKCQEKYNFPSGRIYNMDETGIVTVPKKTHKV 75
            + K   P S+ARAI    V   R+YT +  C +     +  +        VT P K H +
Sbjct: 1389 SFKNYLPGSVARAIDLTLVSGQRYYT-VVSCVDNAGLVTEAVSEEGTLVDVTPPTKGHVI 1447

Query: 74   ISP 66
            +SP
Sbjct: 1448 VSP 1450


>SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -3

Query: 272 KRHSDLALKQATPTSIARAIGFNQVQVNRFYTNLKKCQ-EKYNFPSGRIYNMDETGIVTV 96
           K+H  LA     P+S A        Q  + Y  +   Q EKY F + R   M ++G+V  
Sbjct: 170 KQHESLADSLLNPSSSASRS--RHCQHGQTYEAIALRQYEKYMFSTRRPVKMFKSGLVVT 227

Query: 95  PKKTHKVISPKGKKKLIKLFLENP 24
               H    P+   KL+ L + NP
Sbjct: 228 VVLKHLSSEPQLMAKLLTLAVRNP 251


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 176 NLKKCQEKYNFPSGRIYNMDETGIVTVPKKTHKVISPKGKKKLIKLFLE 30
           N+  C ++   P+ +IY    TG+ +V   TH+++ PK    L+ + L+
Sbjct: 443 NVALCHDRTGRPAWKIYLTRRTGMASV---THQILPPKWLNPLVGIPLK 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,029
Number of Sequences: 59808
Number of extensions: 374088
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)