Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1046
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    28   4.3  
At1g32010.1 68414.m03938 myosin heavy chain-related                    27   7.5  
At5g16430.1 68418.m01920 hypothetical protein                          27   10.0 
At3g60040.1 68416.m06705 F-box family protein contains a novel d...    27   10.0 

>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 164 CQEKYNFPSGRIYNMDETGIVTV 96
           C+ K N P G+ YN DE G VT+
Sbjct: 629 CERKIN-PKGQFYNCDEYGCVTL 650


>At1g32010.1 68414.m03938 myosin heavy chain-related
          Length = 835

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 221 RAIGFNQVQVNRFYTNLKKCQEKYNFPSGRIYNMDET 111
           +A+G N + ++R+  NL+  +EK     G++ N + T
Sbjct: 537 QAVGANNLLISRYDRNLRSAREKILELEGKLKNAERT 573


>At5g16430.1 68418.m01920 hypothetical protein
          Length = 85

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CCFIKSILYFISFCKFVNHFSQCLQW 386
           CC +    Y+ S C+F  H  +C+ W
Sbjct: 16  CCEVSGYGYYCSSCEFGEHL-KCIDW 40


>At3g60040.1 68416.m06705 F-box family protein contains a novel
           domain with similarity to F-box domain;
          Length = 838

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 391 YNHCKH*EKWFTNLQKLMK*RIDLIKQHKWL 299
           Y+HC   E W  NL+ L++ ++DL  + K L
Sbjct: 480 YSHCALGEYWQINLESLVEAKLDLGLERKVL 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,618
Number of Sequences: 28952
Number of extensions: 268844
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)