Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1045
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   2.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   3.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.0  

>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 369 INTKSLNAKSSKGTLTTESDLFYIPNNQGDKNHLRSELIRGMYTD 235
           +N +S++A S++G + + + +   P     K+ LRS  +   Y D
Sbjct: 29  LNIRSIHADSNRGVVNSSNLIIIPPYKPKSKSVLRSPYLTSHYVD 73


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 387 SILNNEINTKSLNAKSSKGTLTTESDLFYIPNNQ 286
           SI+ N+ N    N    K T T+    FYI NN+
Sbjct: 72  SIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNK 105


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 384 ILNNEINTKSLNAKSSKGTLTT----ESDLFYIPNNQGDKNHLRSELIR 250
           IL++E+  K+   K+ + +LT      S +  +PNN  ++NH R  + R
Sbjct: 27  ILDSELRDKTFE-KAHRRSLTLLSSFTSSMLELPNNGKEENHRRPSVAR 74


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 366 NTKSLNAKSSKGTLTTESDLFYIPNNQGDK 277
           +T + + K S   LTT S  F   NN G K
Sbjct: 879 STNTADGKDSASNLTTPSPAFSFGNNSGVK 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,603
Number of Sequences: 5004
Number of extensions: 47654
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)