Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1045
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)                 29   3.1  
SB_53955| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   9.4  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -2

Query: 341 VQRALLPPRAISSTYQIIRGTRII*GVNL-YAVCIPIAINIYI-RKYIYSIMIILLYCPY 168
           V R+ +   +I  T  + R  +    V+  Y VC+PI    Y+ R  I+ + +   Y   
Sbjct: 89  VDRSYIVCLSIGHTQSVCRSVKHRLSVDRSYTVCLPIGHTSYVSRSVIHRMSVDRSYIVC 148

Query: 167 EEINICVDISNYI*HFTSIPMTNAIYCYAGKSNAIYRRIVERIS*D 30
           + I     +S  + H  S+  +  +    G ++ + R ++ R+S D
Sbjct: 149 QSIGHTSYVSRSVIHRMSVYRSYIVCQSIGHTSYVSRSVIHRLSVD 194


>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
          Length = 575

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 323 PPRAISSTYQIIRGTRII*GVNLYAVCIPIAINIYI 216
           P +++ STY    G  +  G+ LYA+ IP+ I+I++
Sbjct: 448 PSQSVPSTYAYSVGVALY-GILLYAITIPLYIHIFL 482


>SB_53955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 47 RLFGDRWRYSYRRNNI 94
          R+FG  W++S+ RNNI
Sbjct: 27 RVFGSVWKFSHERNNI 42


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 378  NNEINTKSLNAKSSKGTLTTESDLFYIPNNQGDKNHL 268
            NN + ++SL+ KSS  T+    D F     Q D NH+
Sbjct: 980  NNRVRSQSLSEKSSSSTVAMGKDYF----EQADINHV 1012


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,373
Number of Sequences: 59808
Number of extensions: 326947
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)