Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1045
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.4  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 179 YCPYEEINICVDISNYI*HFTSIPMTNAIYC 87
           Y  Y   N  +   NYI +   IP+   IYC
Sbjct: 94  YNNYNNYNKKLYYKNYIINIEQIPVPVPIYC 124


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 7   CRNRHEARSYDI 42
           CR RHE RS D+
Sbjct: 522 CRPRHEIRSTDV 533


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 230 INIYIRKYIYSI 195
           IN+Y + YIY+I
Sbjct: 39  INVYTKAYIYTI 50


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 170 YEEINICVDISNYI*HFTSIPMTNAIYC 87
           Y   N  +   NYI +   IP+   IYC
Sbjct: 338 YNNYNKKLYYKNYIINIEQIPVPVPIYC 365


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 309 LFYIPNNQGDKNHLRSELI 253
           +FY+P++ G+K  L S ++
Sbjct: 270 VFYLPSDSGEKVSLCSSIL 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,156
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)