Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1044
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.61 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   1.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   2.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   2.5  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    26   3.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   4.3  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   5.7  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   5.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.5  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   7.5  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   7.5  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   9.9  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    24   9.9  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    24   9.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    24   9.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   9.9  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 32  SSYECPKLVNDCSGHRAHPRTGQL 103
           S   C K  NDCSGH    + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +3

Query: 24  ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 185
           A  ++T A ++    P T+ T ++V++  +  ++G PF  +  L++P    E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 191 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 355
           ++Q+ S+   +PQ       Q    P Q  Q + + RQLH   Q+P  T  S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 406 PSTTLASLVILACTFPVTIQALICPVW 326
           PST LAS  I +   P +I+  + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 225 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 335
           +KE  EL   G      G SNEDD+  + C ++   G
Sbjct: 11  MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 318 LKNQTGHIKAWMVTGNVHAKMTKDANVVE 404
           +K    H +AW   G +H  +  ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 409 CPSTTLASLVILACTFPVTIQALIC 335
           CPS    S  + A  FPVT    IC
Sbjct: 350 CPSRNKTSWAVSANAFPVTPNTTIC 374


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 285 NEDDYGNYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKL 434
           +E D  +   G+KN    I A  +         ++    EG+NIKI CK+
Sbjct: 199 SEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIKIICKI 248


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 460  VTSEYGLPINLQVILMFCPSTTLASLVILA 371
            V S + +  + Q ++    STTLASL++LA
Sbjct: 1645 VASHFNVWPDTQTVMTDAKSTTLASLLLLA 1674


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +3

Query: 189 KKNSVPLGEVAGLKERYE--LQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKA-WMVT 359
           ++NSV L ++A   ERYE  ++N         + + ++    +   KN  G  +A W + 
Sbjct: 5   RENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRII 64

Query: 360 GNVHAKMTKDANVVEGQNIKITCKLIGKPYSEV 458
            ++  K     N  +   IK   K I    S++
Sbjct: 65  SSIEQKEESRGNTRQAALIKEYRKKIEDELSDI 97


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 KGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWMVTGNVHAKMTKD 389
           KG+     G + E  Y N   GL+N  G    W + G + ++  KD
Sbjct: 50  KGILLHSLGNTKEG-YDNVRLGLRNDVGSGVCWHIFGLI-SRADKD 93


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 12  RLFLACGVLTSAQNSSTIA--PVTEP-TQELVNYEALKYIVGRPFNLNCTLA 158
           +LF    V   AQ ++ +A   V+ P +  ++N EALK+ V     LNC +A
Sbjct: 23  KLFSPAKVNPLAQPNTCVAYFDVSLPGSMPILNPEALKFAVKGALALNCEVA 74


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +2

Query: 110 LEVHRWTPVQFELHSRRATGFV*DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ 283
           L+    T V+      R   +V   +  E+   RR GRP G  + PE+    P   P+
Sbjct: 206 LKKREMTRVKHRAGRPRKYSYVNKDLNFEEGLPRRRGRPTGWRKYPEKEEIYPTLSPR 263


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -3

Query: 247 WSSYRSLRPATSPRGTLFFFHTISNESSGTARVQFKLNGRPTMYFK 110
           W S R    +   +  +FF H++   S  T +    +    T+Y K
Sbjct: 290 WMSKRRRNESLIQKANVFFQHSVLAHSFKTWKANLSIKNAATLYEK 335


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 345 AWMVTGNVHAKMTKDANVVEGQNIKITCKL 434
           AW    NV+   T D ++V  +N K + +L
Sbjct: 395 AWSADSNVYGSRTSDRSIVIHKNFKESNRL 424


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 111 LKYIVGRPFNLNCTLAVPLDSFEI-VWKKNSVPLGEVAGLKERYELQN 251
           + Y+VG  F +N    +PLD  +    +K  V L     + E+Y L++
Sbjct: 333 MSYLVGLNFPVNSVGQIPLDYLDCSSRRKAEVALMNALEIGEQYNLKS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,109
Number of Sequences: 5004
Number of extensions: 32173
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)