Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1044
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 31 0.60
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 29 1.4
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 29 1.4
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 1.8
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 28 3.2
10_01_0111 + 1384737-1386215 27 5.6
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 27 5.6
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 9.8
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 9.8
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 179 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 307
DR E A R GR Q + PE A LP+ P + RLR L
Sbjct: 29 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -3
Query: 199 LFFFHTISNESSGTARVQFKLNGRPTMYFKAS*LTSSWVGSVTGAIVDEFWALVRTPQAK 20
L HT+ ++ + T V F++ + +K+ + W+G G I D +W R+P+ +
Sbjct: 343 LLLLHTMHSKVAATTHVSFRVVHFQDLVYKSFGEIAVWLGGQYG-IHDSWWDCGRSPKGR 401
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 179 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 307
DR E A R GR Q + PE A LP P + RLR L
Sbjct: 31 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +3
Query: 237 YELQNKGLTFQIKGRSNE------DDYGNYTCGLKNQTGHIKAW 350
Y + +GL F+I+ +E D +G +T +K + H+KAW
Sbjct: 608 YVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 152 SRRATGFV*DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQ 274
+RR G R++ +++GG PQG V E+ HL +Q
Sbjct: 20 ARRICGMA-SRIDANDHGNQQGGNPQGPVGTAERLEHLLNQ 59
>10_01_0111 + 1384737-1386215
Length = 492
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 36 LTSAQNSSTIAPVTEPTQELVNYEALKY--IVGRPFNLNCTLAVPLDSFEIVWK 191
+++ +N + + PV V+ AL + G P CT VP F+++WK
Sbjct: 46 VSTPRNIARLPPVRPAAAARVDLVALPLPRVDGLPDGAECTNDVPSGKFDLLWK 99
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 240 ELQNKGLTFQIKGRSNEDDYG 302
E+QN G TF + G S+ED+ G
Sbjct: 194 EMQNDGATFLLDGGSSEDNLG 214
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 149 HSRRATGFV*DRMEEEQRASRRGGRP 226
H+RR T + +++ + SRRGG+P
Sbjct: 46 HARRRTTSIDEKISQALSGSRRGGKP 71
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 225 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWMVTGNVHAKMTKDANV 398
LK+ ELQ + ++ +N+D+ N K+Q +K + N +K K+ +V
Sbjct: 744 LKDMNELQEFLVISSLENVNNKDEAANAQLANKSQISRLKLQWDSSNADSKSDKEYDV 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,183
Number of Sequences: 37544
Number of extensions: 233095
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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