Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1044
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74120.1 68414.m08584 mitochondrial transcription termination...    29   1.5  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    28   2.7  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    28   3.6  
At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36) id...    27   4.7  
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    27   4.7  
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    27   6.2  
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    27   6.2  
At1g62810.1 68414.m07091 copper amine oxidase, putative similar ...    27   8.3  

>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 168 DSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDY 299
           D+F++VWK+  V L E+  ++++ E     + F I   ++  +Y
Sbjct: 301 DAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 344


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 170 IQWHGESAIQIERASNDVLQGLIIDQ 93
           + W G S IQ+ R+S+D+ + L++++
Sbjct: 195 LAWRGVSGIQVTRSSSDLQEPLLVEE 220


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 288 EDDYG--NYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 461
           ED+ G  N  C +K Q   +    V   V A    D  V EG+ I IT KLI   Y  ++
Sbjct: 420 EDEAGLANLLCHIKGQNYQVPG--VKNMVEAATYADMVVKEGREIAITNKLIALYYQHLS 477


>At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36)
           identical to 36kDa-peroxisomal membrane protein (PMP36)
           GI:15146342 from [Arabidopsis thaliana]
          Length = 331

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -3

Query: 232 SLRPATSPRGTLFFFHTI-SNESSGTARVQFKLN-GRPTMYFKAS*LTSSWVGSVTGAIV 59
           SL    + +G  ++F+ +  N +  TA  + K   G  ++   AS L +++ GSV   + 
Sbjct: 70  SLAGTAASQGVYYYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAFAGSVNVLMT 129

Query: 58  DEFWALVRTPQAKNSL 11
           +  W +V   Q    +
Sbjct: 130 NPIWVIVTRMQTHRKM 145


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 182 RMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRL 298
           + +++Q+  R GG  +GA+  P+Q + +  Q    RGR+
Sbjct: 492 QQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRM 530


>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
           catalytic subunit, putative similar to SP|O48653 DNA
           polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
           sativa}; contains Pfam profiles: PF03175 DNA polymerase
           type B, organellar and viral, PF00136 DNA polymerase
           family B, PF03104 DNA polymerase family B, exonuclease
           domain
          Length = 1492

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 186 WKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKN 326
           +++  VP GE   LK  Y  +++ L   +KG S     G++T  L++
Sbjct: 459 FERPDVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSALEH 505


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 427 QVILMFCPSTTLASLVILAC 368
           Q  L F PST  A+LV+LAC
Sbjct: 522 QTQLCFWPSTVAAALVVLAC 541


>At1g62810.1 68414.m07091 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 712

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 153 LAVPLDSFEIVW--KKNSVPLGEVAGLKERYELQNKGLTF-QIKGRSNEDDYGNYTCGLK 323
           + V LD  E++    K  +P+ + +G + R+ +QNK +   +I   S E   G      +
Sbjct: 229 VTVDLDKLEVIKIIDKGPIPIPKASGTEYRFGVQNKPVHMDRINPISMEQPDGP---SFR 285

Query: 324 NQTGHIKAWMVTGNVHAKMTKDANVVEGQ 410
            + GH+  W      H K  + A ++  Q
Sbjct: 286 VEDGHLVKW-ANWVFHVKADQRAGMIISQ 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,356
Number of Sequences: 28952
Number of extensions: 177228
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)