Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1043
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 81 7e-16
01_01_0043 - 321810-321973,322054-322846 31 0.58
01_01_0044 - 326337-326500,326618-327398 31 0.76
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 31 1.0
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 1.3
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 4.1
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 4.1
02_03_0383 + 18385109-18385307,18385431-18385516,18385565-183857... 28 7.1
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 27 9.4
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890... 27 9.4
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 81.0 bits (191), Expect = 7e-16
Identities = 40/98 (40%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +2
Query: 341 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 520
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+GR+YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 521 TKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNA 631
T+N+ +++V+ ++A I +E G+ RFI +S L A
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGA 98
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 31.5 bits (68), Expect = 0.58
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 415
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62
Query: 416 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 505
G L L D S+ +AVR ++VVI+ V
Sbjct: 63 GVTLLHG-DLHDHASLLRAVRDADVVISAV 91
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 0.76
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 415
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60
Query: 416 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 508
G L L D S+ AVR ++VVI+ +G
Sbjct: 61 GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 30.7 bits (66), Expect = 1.0
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Frame = +2
Query: 248 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 409
T + S N V G TG +GR++ G L+ P D+ + K+
Sbjct: 2 TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61
Query: 410 DLGQVLFTPYH--LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 583
L T + + D ES+ A+R ++VVI+ VG V +DG ++
Sbjct: 62 SLVASGATIVYGDMNDRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAI 113
Query: 584 REEG-VERFIHLSY 622
+E G V+RF+ Y
Sbjct: 114 KEAGNVKRFVPSEY 127
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 254 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 415
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 352 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 218
+ ++FS A+ SDK EN G + ++ + TS KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 278 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 448
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 449 DEESIAKAVRYSN 487
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
>02_03_0383 +
18385109-18385307,18385431-18385516,18385565-18385765,
18385894-18386058,18386168-18386494
Length = 325
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 377 FYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVD 556
FY+ R ++ ++G + T ++ E ++ KAV+ V++ D E ++ + V
Sbjct: 171 FYETLRAELGSEVGVTILTHGYVESEMTMGKAVQKDGVLV----VDQEARDVQIGVFPVG 226
Query: 557 GVRRIARICREEGVER 604
GV + R+ +G+ R
Sbjct: 227 GVGAMCRVAM-DGIRR 241
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 98 YLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 229
YLSHK++ I L T KL+ + S+S V + DR P+L
Sbjct: 121 YLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162
>03_02_0499 -
8908323-8908423,8908822-8908972,8909761-8909867,
8909954-8910170,8910941-8911148,8911261-8911358
Length = 293
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 254 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 400
GR S +G +A V G T +GR V +L +G + R + +RLK
Sbjct: 14 GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,848
Number of Sequences: 37544
Number of extensions: 308864
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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