Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1043
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   163   7e-41
U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   4.8  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  163 bits (397), Expect = 7e-41
 Identities = 83/165 (50%), Positives = 110/165 (66%)
 Frame = +2

Query: 137 QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGR 316
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG +GF+G 
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGASGFLGL 73

Query: 317 YVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVI 496
            V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI KAV+YSNVVI
Sbjct: 74  PVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSNVVI 133

Query: 497 NLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNA 631
           NL+G    T  + Y DV+  G RR+ARIC+E GVE+F+HLS L A
Sbjct: 134 NLIGTRVPTGKYNYYDVNDTGARRLARICKEMGVEKFVHLSALGA 178


>U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC8.1 protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
 Frame = +2

Query: 287 VFGCTGFVGRYVCNKLGKIG-TQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESI 463
           + G  GF+G +V + L KIG  + I+       + + +K+  D   + +     LD++ +
Sbjct: 6   IVGGGGFLGAHVISALQKIGCKERIIVVDPCPQEFKTIKI--DKSNISYIKASFLDDKVL 63

Query: 464 AKAVRYSNVVINL--VGRD--YETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 619
              +  ++ V++L  VG            ++ +V+G +++ + C+  GV+RF++ S
Sbjct: 64  ENILNGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVKRFLYAS 119


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 304 ICRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 429
           +C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 660 LCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 325 AHIASDKSGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTH 173
           AH +   +   ++ GY+ + + A     +   ++G+ +RT+ S  D  N H
Sbjct: 175 AHYSRFLADLRQHLGYEFIISVAVPQAEVSNLELGYDLRTISSHVDFFNVH 225


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 241 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 155
           L C KV  ++RT V   + H+TH  +Q++
Sbjct: 29  LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,498
Number of Sequences: 27780
Number of extensions: 283816
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)