Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1042
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 115 1e-26
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 42 2e-04
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 33 0.12
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 31 0.50
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4) 30 0.88
SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6) 29 1.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 2.0
SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41) 28 3.6
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 27 4.7
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 27 4.7
SB_28810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 27 4.7
SB_22463| Best HMM Match : VWA (HMM E-Value=0) 27 6.2
SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 27 6.2
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 27 8.2
SB_59004| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32) 27 8.2
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 27 8.2
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 27 8.2
SB_33672| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 9.1
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 115 bits (277), Expect = 1e-26
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Frame = +2
Query: 20 GHVKYMRAQVGPSSKELLTVADFEA-FTSKDEVVVVGFFEKESDLKGEFLKTADKLREEV 196
G ++YM+ Q GPSS E+ +V E + VVVGF + + DLK F++TA+++R+
Sbjct: 637 GIIRYMKKQAGPSSVEIKSVDHLEKKLDDAESNVVVGFLDGDDDLKNAFMRTANEMRDSF 696
Query: 197 TFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLV 376
+FAH+S +VLEK YKN +V++RPK L K E S +A+ G + +K FI HG V
Sbjct: 697 SFAHASVTDVLEKYNYKNQIVVFRPKHLHTKLEPSFIAYTGSPDDFYIKKFINAKAHGRV 756
Query: 377 GVRQKDNIHDF 409
G R DN F
Sbjct: 757 GQRTPDNEEQF 767
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 72.9 bits (171), Expect = 1e-13
Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Frame = +2
Query: 20 GHVKYMRAQVGPSSKELLTVADFEAF-TSKDEVVVVGFFEKESD-LKGEFLKTADKLREE 193
G YMR+QVGPSS+ L ++ + F KD+V ++GFF+ E D + +L+ + +R++
Sbjct: 273 GIASYMRSQVGPSSRILSSLKAVQDFMKEKDDVTIMGFFDGEDDKMLESYLEANNDVRDD 332
Query: 194 VTFAHSSANEVLEKTGY-KNNVVLYRPKRLQNKFEDSSVAFDG-DTEKVSLKAFIKENYH 367
FAH+ + G K+++VL++P+R +K+E ++G D +L+ F K+
Sbjct: 333 YPFAHTFDAAAKKHFGIKKSSIVLFQPERFLSKYEPKHFVYEGKDLSPAALQGFYKDKRV 392
Query: 368 GLVGV 382
LVG+
Sbjct: 393 PLVGL 397
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 26 VKYMRAQVGPSSKELLTVADFEAFTSKDEVVVVGFF-EKESDLKGEFLKTADKLREEVTF 202
V ++ + GP +K+L T + F +K EV VVGFF +KESD FL AD + ++V F
Sbjct: 123 VSWLNKKTGPPAKDLATADAMKDFITK-EVAVVGFFTDKESDAAKAFLSAADGI-DDVEF 180
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 32.7 bits (71), Expect = 0.12
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +2
Query: 5 RNSARGHVKYMRAQVGPSSKELLTVADFEA--FTSKDEVVVVGFFEKESDLKGEFLKTAD 178
R+SA HV+ M + + L D E + + + + E+ DLK + LK D
Sbjct: 810 RSSAEKHVEEMMEKHASEIEMLQAALDTEKEKYEALQQQLQARQQEELEDLKAQHLKELD 869
Query: 179 KLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGD 322
L+E +T + LEK + V L + L+ K + + DGD
Sbjct: 870 NLKEGITPEIDALKSELEKQHQEELVSL--KEYLEEKHQAEIKSIDGD 915
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 30.7 bits (66), Expect = 0.50
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 3 AGIRHEGMSSTCVPKLDPAP 62
AG+R +GM STCV LD AP
Sbjct: 47 AGMRGDGMESTCVVALDSAP 66
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 35 MRAQVGPSSKELLTVADFEAFTSKDEVVVVGFFE-KESDLKGEFLKTADK 181
++ +VG + L V E K+E V G + K S+ +GEF++ ADK
Sbjct: 496 VKKEVGEDERSSLAVEQQEDTRIKEEPVAQGNYNIKHSEEEGEFVEVADK 545
>SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)
Length = 497
Score = 29.9 bits (64), Expect = 0.88
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 RNSARGHVKYMRAQVGPSSKELLTVADFEAFTSKD-EVVVVGF 130
RN+ G +++++A + K++L +AD E + D +++VGF
Sbjct: 292 RNTEYGALRHLKALISAGVKQILDIADGEEDATHDFPIILVGF 334
>SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6)
Length = 324
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = +2
Query: 5 RNSARGHVKYMRAQVGPSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTADKL 184
R ++R ++++ P S ++ +T ++ G+ E+ + E +KT +
Sbjct: 64 RPASRSRGSFLKSPDNPESYPMVQSIPVPTYTGVGDIE--GYIER-LECYFELMKTRTES 120
Query: 185 REEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVA 310
R + +A ++E GY N L R K + ++ SVA
Sbjct: 121 RVPLLLCGLAAGRLIEHYGYARNTRLERAKFRALRRDEESVA 162
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 237 PDTKTMWSCIVPSDSRTSLKTHLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTSMISA 413
P T + + PS S TS T PST TPR S ++ R + T TTS+ A
Sbjct: 103 PRTGSTTTTSAPSTSTTSNSTTRAPSTSTPR-TGSTITLRTSTTSVMTTTPSTTSISRA 160
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 237 PDTKTMWSCIVPSDSRTSLKTHLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTSMISAT 416
P T + + PS S TS T PST TPR + +S + + + TTS S +
Sbjct: 42 PRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTS 101
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -1
Query: 237 VFSRTSLADE*AKVTSSLNLSAVFRNSPFRSDSFSKNPTTTTSSLEVKASKSAT 76
+FS+ E VT++ +A NS + S TTTTSSL + S SAT
Sbjct: 359 IFSKCQQVGENTSVTTAATTTATQSNSMTTTSS-----TTTTSSLSSEGSSSAT 407
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 204 AKVTSSLNLSAVFR-NSPFRSDSFSKNPTTTTSSLEVKASKSAT 76
AK TS++ NSP + S S+ T+TT SLEVK + + T
Sbjct: 1687 AKTTSTIRTELTLDVNSPKQEMSTSRPQTSTTLSLEVKDNLTKT 1730
>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
Length = 1008
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -1
Query: 198 VTSSLNLSAVFRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLELGPTWARMYLTC 22
VT + +LS + S + S +P T T L +S+ + ++L + P +L+C
Sbjct: 816 VTCTKHLSCHVHQASLLSRAPSISPVTCTKHLSCHVHQSSLLSNALSISPVTCTKHLSC 874
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -1
Query: 240 PVFSRTSLADE*AKVTSSLNLSAVFRNSPFRSDSFSKNPTTTTSSLE 100
P + + + E + VTSS+ S + + +D+F + P +++S++E
Sbjct: 370 PSVTPSLTSSESSAVTSSMTSSVIMKQDSSLADAFDRAPMSSSSAVE 416
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 170 TADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFED 298
T+DK + HS +N K G KN PK+ + +F+D
Sbjct: 147 TSDKEAGKSIVKHSKSNTTSNKEGEKNTPTSKSPKKGRIRFKD 189
>SB_28810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.5 bits (58), Expect = 4.7
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 26 VKYMRAQVGPSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTADKLR---EEV 196
V ++ Q PS + + VA K + FF++E FL+ L+ +EV
Sbjct: 232 VAELKTQGAPSEEFRIPVAKLVEEYEKKFGSPLKFFKEEFVKLESFLRHCCGLQVEGDEV 291
Query: 197 TFAHSSANEVLEKTGYKNNVVLYRPK 274
F H + N K ++ +L RP+
Sbjct: 292 RFVHGTTNNASVKQQHQQQQILSRPQ 317
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 204 AKVTSSLNLSAVFRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLEL 55
AK+TS N + R +PFR+ + P+ ++ S + R ++EL
Sbjct: 641 AKITSLGNEGSQLRRAPFRASAHHSRPSLLNNTKSGDISTNPGPRKAIEL 690
>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
Length = 1865
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 293 EDSSVAFDGDTEKVSLKAFIKENYHGLVG 379
++S+ DGD KV K F+K+ H LVG
Sbjct: 13 DNSAAVTDGDLTKV--KTFVKDLIHALVG 39
>SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 293 EDSSVAFDGDTEKVSLKAFIKENYHGLVG 379
++S+ DGD KV K F+K+ H LVG
Sbjct: 162 DNSAAVTDGDLTKV--KTFVKDLIHALVG 188
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 27.1 bits (57), Expect = 6.2
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Frame = +2
Query: 101 SKDEVVVVGFFEKESDLKGE-FLKTADKLREEV--TFAHSSANEVLEKTGYKNNVVLYRP 271
S+ V V +F+ +DL GE F++T D +R + A +S +L TG +
Sbjct: 321 SRARVPDVSYFDA-ADLLGEVFVETVDTVRTRMFMDLASTSGRNIL-LTGPRGCGKTSLI 378
Query: 272 KRLQNKFEDSS-----VAFDGDTEKVSLKAFIKEN-YH 367
+K ED + F G ++ VSL+ FI+ N YH
Sbjct: 379 NDFLDKQEDKNQIVKRYVFSGTSKAVSLQQFIENNIYH 416
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 237 PDTKTMWSCIVPSDS--RTSLKTHLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTS 401
P T T + P + RT+ P T TPR + + RT T + K+TT+
Sbjct: 1771 PPTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPETTKPRTTTPKTTTPKKTTA 1827
>SB_59004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 131 FEKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVA 310
F K+S KG + + ++ + V +S +E T + V++ PKR+QN +++ +
Sbjct: 246 FPKKSTGKGSSMLSKTQIGKSVMRTGASKSE----TRKNHLTVIHNPKRVQNNYQELKLE 301
Query: 311 FDGDTEKVSL 340
E SL
Sbjct: 302 SISGLENPSL 311
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 204 LIHQPMKFLKKPDTKTMWSCIVPSDSRTSLKTHLLPSTETPRKC 335
++ +KF +K D + +++RT ++TH ST+T RKC
Sbjct: 80 IVIDSIKFYEKNDIQIHVHTYRNANTRTRIQTHKCTSTQT-RKC 122
>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
Length = 947
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 228 RTSLADE*AKVTSSLNLSAVFRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSS 64
RTS+ + + S+ + + +S SDS S +P TSS + + S +RS+
Sbjct: 852 RTSIPRSGSGNSYSVMATTIPTSSSATSDSSSPHPAMRTSSFTISGNPSPAMRST 906
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 246 KTMWSCIVPSDSRTSLKTHLLPSTETPRKCHSKLSSRRTI 365
KT W + +TSLKT L S +T K K S + ++
Sbjct: 219 KTRWKTSRKTSPKTSLKTSLKTSLKTSLKASLKTSLKTSL 258
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 26.6 bits (56), Expect = 8.2
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 14 ARGHVKYMRAQV-GPSSKELLTVADFEAFTSKDEVVVVGFFEKE--SDLKGEFL-KTADK 181
ARG +K+ + G + + T D E E G+ E E D G L K+ DK
Sbjct: 588 ARGSIKHAEEEASGEETPDDETSGD-EVDVGSGEESASGYLELEVVKDTVGSKLRKSEDK 646
Query: 182 LR---EEVTFAHSSANEVLEKTGYKNNVVLYRP 271
++ T + + + EK KN+VV++RP
Sbjct: 647 TESGAKKDTISSDAQAQHTEKGSKKNSVVIHRP 679
>SB_33672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 203 AHSSANEVLEKTGYKNNVVLYRPKRLQNK 289
A+ +A +LE YK+ + + R R++ K
Sbjct: 250 AYKTAEYILEVNKYKDGLAVTRDPRIKEK 278
Score = 22.2 bits (45), Expect(2) = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 350 IKENYHGLVGVRQKDNIHDF 409
IKE +G++ + K IHDF
Sbjct: 275 IKEKGYGIMEGKTKAEIHDF 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,499
Number of Sequences: 59808
Number of extensions: 244694
Number of successful extensions: 874
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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