Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1042
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.79 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   9.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.7  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 284  NKFEDSSVAFDGDTEKVSLKAFIKENY--HGLVGVRQKDNIHDF 409
            +KF D S+A DG  E+V LKA     Y   GL G    D+ +DF
Sbjct: 1569 DKF-DVSLALDG--ERVMLKASEDYRYSVRGLCGNFDHDSTNDF 1609


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/49 (18%), Positives = 21/49 (42%)
 Frame = +2

Query: 53  PSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTADKLREEVT 199
           PS++E + + +      +  V            KGE+  +  +++E +T
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKEAIT 420


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 209 SSANEVLEKTGYKNNVVLYRPKRLQNKFEDSS 304
           SS N V +KTG    ++   P     K+ED S
Sbjct: 93  SSLNVVSDKTGNGGRLLQPYPDWSFAKYEDCS 124


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  SSKELLTVADFEAFTSKDEVVVVGFFEKESD 148
           SS+     A   + +  DEV V+G+   +SD
Sbjct: 189 SSRNSDRSAGSPSVSESDEVDVIGYTSNQSD 219


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 VVVGFFEKESDLKGEFLKTADKLREEV 196
           +V+G FE E      F   ADK  + +
Sbjct: 54  IVIGGFEIEKSEDDSFNNQADKSEKRI 80


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 294 SNLFWSRLGRYKTTL 250
           SNLFW  +G Y  +L
Sbjct: 35  SNLFWLFVGTYFPSL 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,484
Number of Sequences: 438
Number of extensions: 2249
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)