Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1041
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 75 3e-15
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 62 2e-11
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 27 0.68
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 0.90
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 1.2
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 2.1
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 25 4.8
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 6.3
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 24 6.3
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.3
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 6.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 8.3
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 8.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 8.3
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 24 8.3
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 75.4 bits (177), Expect = 3e-15
Identities = 36/89 (40%), Positives = 54/89 (60%)
Frame = +2
Query: 98 KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMG 277
K EG D++ ++I T +I+ + V LQFPD+ L S KV + + +E ++ I+
Sbjct: 28 KIEG--DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVEANVQILA 85
Query: 278 DTSYASCSIDSVAAMHVQANGIVHYGHKC 364
DT+Y SC +D VAA H+ A+ IVHYG C
Sbjct: 86 DTNYGSCCVDEVAAEHMSADAIVHYGRAC 114
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 62.5 bits (145), Expect = 2e-11
Identities = 28/79 (35%), Positives = 43/79 (54%)
Frame = +2
Query: 128 NFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMGDTSYASCSID 307
NF+I +T I +K +V LQ P+ LL C + + +V+ +MGD +Y +C ID
Sbjct: 74 NFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCILSDIFEQFCQVETIVMGDVTYGACCID 133
Query: 308 SVAAMHVQANGIVHYGHKC 364
A + + +VHYGH C
Sbjct: 134 DFTARALDCDFLVHYGHSC 152
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 0.68
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 178 RKLFSFD-PFACFLYIKIGDYIVITFSFIYCYLTCYTYFVFCSKIPHF 38
RKL D PF ++ I D+IV S + Y +F FC +P F
Sbjct: 447 RKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKYKFFAFCG-VPLF 493
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 0.90
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 136 IKIGDYIVITFSFIYCYLTCYTYF 65
I+I YI + SFIYC + +T F
Sbjct: 138 IRILYYIYVAVSFIYCVMAFFTIF 161
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 38 KMGNFTTEDKICITREITVN--KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDL 208
++ N E+KI E T++ K+E + D+ ++++ ++ +++K + L+FPD++
Sbjct: 420 EISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 122 ITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKD 247
I +D + CK IE K FPD + C EIK+
Sbjct: 122 IAAYDEGKLCKSIEESKLGVSQSFFPDVTKRLPCSCLSEIKN 163
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 154 FACFLYIKIGDYIVITFSFIYCYLTCYTYFVFCSKIPHFIFDIV 23
F +LY G ++ F Y Y T FVF +I +V
Sbjct: 61 FTNYLYAGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLV 104
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 118 IVITFSFIYCYLTCYTYFVFC 56
I + + F+Y CY+Y V C
Sbjct: 453 IFLGWGFLYVLAVCYSYLVDC 473
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 24.2 bits (50), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 233 YKLCNLLLAGHREIVSTLSQTFFFRSICM 147
YK C++ + HR + +T S F S CM
Sbjct: 841 YKSCDIRCSDHRPVFATFSLKIF--STCM 867
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 200 REIVSTLSQTFFFRSICMFPLYQN 129
R + ++S++FF S FPL+QN
Sbjct: 27 RAVSPSISRSFFQHSNGSFPLFQN 50
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 77 TREITVNKTEGYDDIITNFDIKETCKWI 160
TR+I V + G+ + +T+FD +T +W+
Sbjct: 561 TRKI-VRELWGHSNRLTSFDFSDTGRWL 587
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 2 LFYHKL----KNYVKNKMGNFTTEDKICITREITVNKTEG 109
LFY K +YV++ M NF ++ +C+ R ++ +G
Sbjct: 1523 LFYEKYDSTWSSYVEDSMKNFLNDNTMCV-RSFLASEMDG 1561
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 137 YQNW*LYRHNLQFYLLLSHVLYIF 66
Y N RH L+ YL+LS +L F
Sbjct: 323 YDNLEQCRHELELYLVLSIILLSF 346
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 2 LFYHKL----KNYVKNKMGNFTTEDKICITREITVNKTEG 109
LFY K +YV++ M NF ++ +C+ R ++ +G
Sbjct: 1523 LFYEKYDSTWSSYVEDSMKNFLNDNTMCV-RSFLASEMDG 1561
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 140 KETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMGDT 283
K+ WI A+ L FP ++ ++ E ++ I ++I DT
Sbjct: 62 KQCVSWIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADT 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,482
Number of Sequences: 5004
Number of extensions: 31158
Number of successful extensions: 94
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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