Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1041
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   1e-15
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   2.6  
SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   3.4  
SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)                       27   4.6  
SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   8.0  
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 36/94 (38%), Positives = 53/94 (56%)
 Frame = +2

Query: 83  EITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVD 262
           ++   KTE  + ++  ++I+ + + I    F KV LQFPD LL  S  V + I+ R    
Sbjct: 36  DVPSTKTESIERMVEVYEIERSVQVITSSGFNKVALQFPDSLLADSASVARLIEQRASCK 95

Query: 263 LYIMGDTSYASCSIDSVAAMHVQANGIVHYGHKC 364
            +I+ DTSY SC +D +AA H  A  I+HYG  C
Sbjct: 96  AFILADTSYGSCCVDEIAAEHADAELIIHYGQAC 129


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 80  REITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFP 199
           R + ++    Y   ++   +KE  K ++ KKF+K CL+ P
Sbjct: 319 RHVGISVLHDYGAELSEEKMKEYMKALKTKKFSKFCLRHP 358


>SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 KVYKEIKDRIEVDLYIMGDTSYASCSIDSVAAMH 325
           K YK+ KD +    +   DTS AS S+D    +H
Sbjct: 76  KTYKDHKDTVSCLQFNWNDTSIASGSVDGNILLH 109


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 121 YIVITFSFIYCYLTCYTYFVFC 56
           Y    + + YCY  CY Y  +C
Sbjct: 478 YYCYCYCYYYCYYYCYCYCYYC 499


>SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)
          Length = 586

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 5   FYHKLKNYVKNKMGNFTTEDKICITREITVNKTEGYDDIITNFDIKETCKWIER 166
           FY  + +    ++     E  +C +  IT+N  E  D+ I NF +    K + R
Sbjct: 491 FYEIVDSSESYRLSGQQPELVVCSSERITINNFEWTDEQILNFRVSSYFKTVMR 544


>SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 157 PFACFLYIKIGDYIVITFS-FIYCYLTCYTYFVFCSKIP 44
           P + FL +    Y++I  S F+  +L  Y  F FC++ P
Sbjct: 90  PLSAFLVLCPHTYLLIGLSRFVPAHLPPYLPFAFCARTP 128


>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 73 TYFVFCSKIPHFIFDIV 23
          TYF+FC KI  F  D+V
Sbjct: 27 TYFMFCVKISSFTLDLV 43


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 118  IVITFSFIYCYLTCYTYFVF 59
            + I F+F+ CY+ C+  F++
Sbjct: 1727 LYIYFAFVLCYIPCFAAFLY 1746


>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 11  HKLKNYVKNKMGNFTTEDKICITREITVNKTEGY 112
           H  +  V +  GN T EDK C+   + + +T  Y
Sbjct: 191 HLCRTLVPDLYGNLTNEDKACVDNWLDLAQTLHY 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,717
Number of Sequences: 59808
Number of extensions: 213813
Number of successful extensions: 513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)