Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1041
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.8  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 97  IYCYLTCYTYFVFCSKIPHFIFD-IVFQLMI 8
           + CY TC    +   K  +F FD IV QL I
Sbjct: 65  LQCYTTCIMKLLRTFKNGNFDFDMIVKQLEI 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 KEIKDRIEVDLYIMGDTSYASCSIDSVAAMHVQAN 337
           K  +DR   + YI G+    +CS+D +  ++ Q +
Sbjct: 665 KVAEDRPLPEFYIGGNPFNCNCSMDWLPGINNQTS 699


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 267 ILWEIHHMLAVV*ILWQLCM 326
           I WE+   LAVV I+   C+
Sbjct: 205 IRWELAGTLAVVWIMCYFCI 224


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 267 ILWEIHHMLAVV*ILWQLCM 326
           I WE+   LAVV I+   C+
Sbjct: 258 IRWELAGTLAVVWIMCYFCI 277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 56   TEDKICITREITVNKTEG 109
            T+DKIC T    V+   G
Sbjct: 1697 TDDKICFTMRPVVSCASG 1714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,643
Number of Sequences: 438
Number of extensions: 2180
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)