Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1040
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   2.1  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.8  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    26   3.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.5  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.6  

>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 607 IELCAAYHSIKCDIQGFFFVCSNASNLRFNRNETIMYYFLTIPTDA 470
           IE    +  I+  +QG     +NA    F  +E + YY+L +PT A
Sbjct: 448 IEAVVDHSIIEVYLQGGIMCLTNA--YYFKGDEPLQYYYLRVPTGA 491


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 283 SFCFIFYL*TTQITKSQYLIMSKNSLSHLCNILYKVKKY 399
           S CF+F L T Q   +  L+  K+S   + N+L+   KY
Sbjct: 354 SLCFLFLLLTNQPRFTDELVNFKSSNEMMMNLLFIHVKY 392


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 550 VCSNASNLRFNRNETIMYYFLTIPTDAI*VIKYQ 449
           + SNA N R  R  T+     T+ TD + VIKYQ
Sbjct: 103 IVSNAKNYR--REPTVPLVVPTVNTDHLDVIKYQ 134


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 241 INGCIPCVFGFFVNGYLY*AVVPSASEKFVFRKMN 137
           I+G +PC  G FV G  Y AVV   + +  + +++
Sbjct: 65  IHGMLPCKQGLFVWGGTYFAVVDVETSQVYYDRIS 99


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 255 LQLIVLTVVYLVFLVSL*MGTCTKLLYRLLVRNLYSGK*MFRPSIVRTLYPTN 97
           L+L  L  +YL    S+   T  K   +L++ ++YS   M R   +RTL   N
Sbjct: 64  LELKKLCYLYLKIYASV-KPTEAKRAVKLILNDIYSSNPMIRSLALRTLTSVN 115


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 110 RVLTILGRNIHFPEYKFLTSRRYNSLVQVPIYKETKNTRY 229
           RV  +L +NI    Y  L S ++  L +    KET++  Y
Sbjct: 799 RVFPLLPKNISMKSYHSLFSSQFRQLFEELSNKETQSKLY 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,049
Number of Sequences: 5004
Number of extensions: 41861
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)