Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1040
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.33 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 536 KQSTF*SE*NNYVLFFNYTHRCNMSYKVSKYCCSYVQ 426
           K S + +  NNY  + NY +  N +YK   Y  +Y++
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIE 359


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 146 PEYKFLTSRRYNSLVQVPIYKETKNTRYTTVNTISCKNNKVYLVKR 283
           PE+  +      SLV       T     TT  TIS K+ KV++V +
Sbjct: 365 PEFGSIYFLGNYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVVNK 410


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 564 KDSFSCAQTQAIYVLIGMKQLCI 496
           K SFSC   + +YV +G  ++ I
Sbjct: 14  KKSFSCKYCEKVYVSLGALKMHI 36


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = -1

Query: 485 YTHRCNMSYKVSKYCCSYVQLRFVLGV*RYFFTLY 381
           +T  CN      +Y C  V L F      Y   +Y
Sbjct: 215 FTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = -1

Query: 485 YTHRCNMSYKVSKYCCSYVQLRFVLGV*RYFFTLY 381
           +T  CN      +Y C  V L F      Y   +Y
Sbjct: 215 FTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,895
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)