Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1040
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    30   1.1  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.6  

>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 89  FTALVGYRVLTILGRNIHFPEYKFLTSRRYNSLVQVPIYKETK 217
           F    GYR   +LGRN  F +Y+   ++R + LV   +  E +
Sbjct: 75  FEVFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIR 117


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 128 GRNIHFPEYKFLTSRRYNSLVQVPIYKETKNTRYTTVNTISCKNNKVYLVK 280
           GR++H P YKFL+   +N+  +  + KE   T+  TV     +N  + +V+
Sbjct: 441 GRSVHEPSYKFLS---FNAGPRTCLGKEVAMTQMKTVAVKIIQNYDINVVE 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,545
Number of Sequences: 28952
Number of extensions: 192875
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)