Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1032
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12030.1 68418.m01406 17.7 kDa class II heat shock protein 17... 43 2e-04
At5g12020.1 68418.m01405 17.6 kDa class II heat shock protein (... 42 2e-04
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 42 3e-04
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 39 0.002
At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock... 38 0.007
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS... 37 0.012
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 36 0.016
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 36 0.021
At4g25200.1 68417.m03627 23.6 kDa mitochondrial small heat shock... 36 0.028
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS... 35 0.049
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 33 0.20
At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containi... 32 0.35
At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containi... 31 0.61
At1g45207.2 68414.m05186 remorin family protein Since this genom... 30 1.1
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 29 2.4
At1g54115.1 68414.m06169 cation exchanger, putative 29 2.4
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co... 29 3.2
At1g24540.1 68414.m03089 cytochrome P450, putative similar to GB... 28 4.3
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 27 7.5
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro... 27 7.5
At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing ... 27 9.9
At5g37670.1 68418.m04537 15.7 kDa class I-related small heat sho... 27 9.9
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 27 9.9
At2g34180.1 68415.m04183 CBL-interacting protein kinase 13 (CIPK... 27 9.9
At1g73770.1 68414.m08541 hypothetical protein 27 9.9
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 27 9.9
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 27 9.9
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,... 27 9.9
>At5g12030.1 68418.m01406 17.7 kDa class II heat shock protein 17.6A
(HSP17.7-CII) identical to heat shock protein 17.6A
GI:3256075 from [Arabidopsis thaliana]
Length = 156
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Frame = +1
Query: 313 LDVQQFTPDEITVKASN-NTVVVEGKHEEKQDEHG---FISRQ-----FTRRYILPTGYE 465
+D+ DEI V+ N N +VV GK + E+ F+ + F R++ LP +
Sbjct: 61 VDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNAD 120
Query: 466 VNDLVSTLSSDGVLTVTAPKRPPP 537
+ + +S +DGVL VT PK PPP
Sbjct: 121 L-EKISAACNDGVLKVTIPKLPPP 143
>At5g12020.1 68418.m01405 17.6 kDa class II heat shock protein
(HSP17.6-CII) identical to 17.6 kDa class II heat shock
protein SP:P29830 from [Arabidopsis thaliana]
Length = 155
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Frame = +1
Query: 301 FEVILDVQQFTPDEITVKASNNTVVV---EGKHEEKQDEHGFISR------QFTRRYILP 453
+ ++D+ DEI V+ N+ V+V E + E K++E R +F R++ LP
Sbjct: 56 YAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLP 115
Query: 454 TGYEVNDLVSTLSSDGVLTVTAPKRPPP 537
++ D +S + DGVL VT K PPP
Sbjct: 116 ENADL-DKISAVCHDGVLKVTVQKLPPP 142
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 41.9 bits (94), Expect = 3e-04
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Frame = +1
Query: 232 FRPWRASLARQESSSTINL------TKEKFEVILDVQQFTPDEITVKASNNTVV-VEG-K 387
F+ +S +E+S+ +N T E D+ +E+ V+ ++V+ + G +
Sbjct: 28 FKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGER 87
Query: 388 HEEKQDEHGFISR------QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNAGE 549
H EK+D++ R QFTRR+ LP ++ D V +GVLTVT PK A
Sbjct: 88 HVEKEDKNDTWHRVERSSGQFTRRFRLPENVKM-DQVKAAMENGVLTVTVPKAETKKADV 146
Query: 550 RIVPIT 567
+ + I+
Sbjct: 147 KSIQIS 152
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Frame = +1
Query: 289 TKEKFEVILDVQQFTPDEITVKASNNTVV-VEG----KHEEKQDEHGFISR---QFTRRY 444
T E E++LD+ DE+ ++ N V+ V G + E+K D+ + R +F R++
Sbjct: 78 TAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQF 137
Query: 445 ILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNA-GERIVPI 564
LP ++ + + L +GVLT+ K P G R+V I
Sbjct: 138 KLPDNVDMESVKAKL-ENGVLTINLTKLSPEKVKGPRVVNI 177
>At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock
protein (HSP23.5-M) similar to heat shock 22 kDa
protein, mitochondrial precursor SP:Q96331 from
[Arabidopsis thaliana]; identified in Scharf, K-D., et
al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 210
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +1
Query: 292 KEKFEVI---LDVQQFTPDEITVKASNNTVVV--EGKHEEKQDEHGFISRQFTRRYILPT 456
KEK + + +D+ + +++ + NT+V+ EG+ EE +D G R+FT R LP
Sbjct: 114 KEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGD-GRRFTSRIELPE 172
Query: 457 GYEVNDLVSTLSSDGVLTVTAPK 525
D + +GVL V PK
Sbjct: 173 KVYKTDEIKAEMKNGVLKVVIPK 195
>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
(HSP17.8-CI) similar to 17.5 kDa class I heat shock
protein SP:P04793 from [Glycine max]; contains Pfam
PF00011: Hsp20/alpha crystallin family
Length = 157
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +1
Query: 316 DVQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISR---QFTRRYILPTGYEVN 471
D+ +E+ V+ +++V+ + G+ EEKQD + R QF+R++ LP ++
Sbjct: 64 DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKM- 122
Query: 472 DLVSTLSSDGVLTVTAPK 525
D V +GVLTVT PK
Sbjct: 123 DQVKASMENGVLTVTVPK 140
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Frame = +1
Query: 316 DVQQFTPDEITVKASNNTVV-VEGK----HEEKQDEHGFISR---QFTRRYILPTGYEVN 471
D+ +E+ V+ + ++ + G+ +EEK D+ + R +FTRR+ LP ++
Sbjct: 66 DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125
Query: 472 DLVSTLSSDGVLTVTAPKRP 531
++ +++ +GVL+VT PK P
Sbjct: 126 EIKASM-ENGVLSVTVPKVP 144
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Frame = +1
Query: 316 DVQQFTPDEITVKASNNTVV-VEGK----HEEKQDEHGFISR---QFTRRYILPTGYEVN 471
D+ +E+ V+ + V+ + G+ +EEK D+ + R +F RR+ LP ++
Sbjct: 68 DLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKME 127
Query: 472 DLVSTLSSDGVLTVTAPKRP 531
++ +T+ + GVLTV PK P
Sbjct: 128 EVKATMEN-GVLTVVVPKAP 146
>At4g25200.1 68417.m03627 23.6 kDa mitochondrial small heat shock
protein (HSP23.6-M) contains Pfam profile PF00011:
Hsp20/alpha crystallin family
Length = 210
Score = 35.5 bits (78), Expect = 0.028
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +1
Query: 292 KEKFEVI---LDVQQFTPDEITVKASNNTVVV--EGKHEEKQDEHGFI-SRQFTRRYILP 453
KEK + + +D+ + +++ + +T+V+ EGK+EE E G +R+FT R LP
Sbjct: 112 KEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLP 171
Query: 454 TGYEVNDLVSTLSSDGVLTVTAPK 525
D + +GVL V PK
Sbjct: 172 DKIYKIDEIKAEMKNGVLKVVIPK 195
>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
(HSP17.6A-CI) similar to 17.5 kDa class I heat shock
protein SP:P04793 from [Glycine max]
Length = 155
Score = 34.7 bits (76), Expect = 0.049
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 316 DVQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISRQ---FTRRYILPTGYEVN 471
D+ +E+ V+ +++V+ + G+ EEKQD + R F+R++ LP ++
Sbjct: 62 DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKM- 120
Query: 472 DLVSTLSSDGVLTVTAPK 525
D V +GVLTVT PK
Sbjct: 121 DQVKASMENGVLTVTVPK 138
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 250 SLARQESSSTINL-TKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISR 426
+++++E+ I L T+EK EV+ + + +E TV +V E +E +DE +
Sbjct: 552 TISKEEAGDEIKLITEEKTEVVSEPKAEVEEEGTVMEEEE-IVGEEVYEGNEDEQAYEGD 610
Query: 427 QFTRRYILPTGYE 465
+ Y GYE
Sbjct: 611 ELNGEYYYEEGYE 623
>At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 323
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 322 QQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLV 480
+Q PD +T A N +V EGK E ++ +G RR I PT N ++
Sbjct: 140 RQINPDVVTFSALINALVKEGKVSEAEEIYG----DMLRRGIFPTTITYNSMI 188
>At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 627
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 313 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLS 492
+D+ PD++T + EGK EE ++ G + RR I P N L+S S
Sbjct: 493 MDMMSINPDDVTYNCLMRGLCGEGKFEEARELMG----EMKRRGIKPDHISYNTLISGYS 548
Query: 493 SDG 501
G
Sbjct: 549 KKG 551
>At1g45207.2 68414.m05186 remorin family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 555
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 599 AASGCLAGPVFVIGTILSPALG---GGRFGAVTVSTPSEDNVLTRSLTS 462
A SG L P F ++ SPA+ GG G +T S+P VL +++S
Sbjct: 264 AKSGPLGPPGFAYYSLYSPAVPMVHGGNMGGLTASSPFSAGVLPETVSS 312
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 162 SEEGRSVILHQFIPLDLALQKFILQTLEGELSQAGIFFDDQF 287
S R +L F+PL LA F+LQ G +FDD +
Sbjct: 580 SSYSRKFLLITFLPLSLACLAFLLQWRSGVNDSVTQWFDDNY 621
>At1g54115.1 68414.m06169 cation exchanger, putative
Length = 644
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 611 GFEDAASGCLAGPVF--VIGTILSPALGGGRFGAVTVSTPSEDNVLTRSL 468
G + A SGC AGP+F ++G +S LG T P EDN L +L
Sbjct: 544 GVQIALSGCYAGPMFNTLVGLGMSMFLGAWSKSPETYMIP-EDNSLFYTL 592
>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
contains INTERPRO domain, IPR001206, DAG-kinase
catalytic domain
Length = 1240
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 334 PDEITVKASNNTVVVEG-KHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLT 510
PDE + SN + +G K +++G+ S + + P GY DL + VL
Sbjct: 66 PDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSV-PNGYTCVDLSLYKDKELVLL 124
Query: 511 VTAPKRPPPNAGERIVPITKTG 576
+ +GE + + +TG
Sbjct: 125 LNKTNTDSEGSGEACMMVVQTG 146
>At1g24540.1 68414.m03089 cytochrome P450, putative similar to
GB:AAB87111, similar to ESTs dbj|D41610, gb|T20562 and
emb|Z26058
Length = 522
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 533 GGRFGAVTVSTPSEDNVLTRSLTSYPVGRMYR 438
GG +G +T + +++L + +YP G YR
Sbjct: 85 GGAYGIMTADPANVEHILKTNFKNYPKGAFYR 116
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 273 FDDQFDEREI*GYFRRSAIHSRRD-HGQGVEQHGCRRRQARGE 398
+DD+ E+ YFRR S++D G G G + GE
Sbjct: 471 YDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGE 513
>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
protein (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family: identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 134
Score = 27.5 bits (58), Expect = 7.5
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 217 FRNSYFRPWRASLARQ------ESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVV 378
F+ PW LA Q E+ + + + +D+ +EI V+ ++ ++
Sbjct: 3 FQTIQVMPWEYVLASQSLNNYQENHVRWSQSPDSHTFSVDLPGLRKEEIKVEIEDSIYLI 62
Query: 379 EGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKR 528
+ F R++ LP ++ +S DGVLTV PKR
Sbjct: 63 IRTEATPMSPPDQPLKTFKRKFRLPESIDMIG-ISAGYEDGVLTVIVPKR 111
>At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing
protein similar to dof6 zinc finger protein GI:5689615
from [Arabidopsis thaliana]
Length = 257
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 434 PAGTSCRPDTRSTTWSARCLPTACSPS 514
P G CR + RST+ +AR L T P+
Sbjct: 99 PVGGGCRKNKRSTSSAARSLRTTPEPA 125
>At5g37670.1 68418.m04537 15.7 kDa class I-related small heat shock
protein-like (HSP15.7-CI) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 137
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 427 QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPK 525
+F RR LP +V D V +GVLTV PK
Sbjct: 88 EFLRRIELPENVKV-DQVKAYVENGVLTVVVPK 119
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 407 STASFPVSSPAGTSCRPDTRSTTWSARCLPTACSPS 514
ST S P S+P+ S P T ST S P+ SPS
Sbjct: 126 STPSSPPSTPSTPSSPPSTPSTPSSPPSPPSPPSPS 161
>At2g34180.1 68415.m04183 CBL-interacting protein kinase 13 (CIPK13)
identical to CBL-interacting protein kinase 13
[Arabidopsis thaliana] gi|13249125|gb|AAK16688
Length = 502
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 120 DTLPVIPPIAKHHWYYRHLFYLKFVV 43
DT IP I KH W+ + ++KF +
Sbjct: 297 DTRITIPEIMKHRWFKKGFKHVKFYI 322
>At1g73770.1 68414.m08541 hypothetical protein
Length = 191
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 376 VEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDG 501
+ GKH++ DE R+Y + ++V+D+ S + SDG
Sbjct: 97 LSGKHDDSDDE----VMDVVRKYPVNDAHKVDDIDSDIESDG 134
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 337 DEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYE-VNDL 477
DE+ A N + K + K + GF+ T + P Y+ VNDL
Sbjct: 113 DELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDL 160
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 337 DEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYE-VNDL 477
DE+ A N + K + K + GF+ T + P Y+ VNDL
Sbjct: 113 DELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDL 160
>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
PF04678: Protein of unknown function, DUF607
Length = 292
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 533 GGRFGAVTVSTPSED-NVLTRSLTSYPVGRMYRRVN*REMK 414
GG VTV TPSED + +T ++ R VN +MK
Sbjct: 28 GGLRSCVTVKTPSEDEEEKKKEITIAEAKKLMRLVNVEDMK 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,457
Number of Sequences: 28952
Number of extensions: 252486
Number of successful extensions: 907
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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