Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1031
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    70   4e-13
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    39   7e-04
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.3  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 31/61 (50%), Positives = 38/61 (62%)
 Frame = -2

Query: 667 NFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGR 488
           N VS PNY +E   WLFF ++TK   + +F   G  QM VWA  KH  Y KEFP+YP+ R
Sbjct: 228 NLVSFPNYFFESLGWLFFALLTKSWASWIFLFVGSAQMFVWAKKKHARYLKEFPNYPRSR 287

Query: 487 K 485
           K
Sbjct: 288 K 288


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 664 FVSCPNYTYEFGSWL--FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKG 491
           +VSCPNY  E+  W   +        P   F  +    M   A+  H+ Y K+FP YP  
Sbjct: 214 YVSCPNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKKFPKYPAN 273

Query: 490 RKA 482
           R+A
Sbjct: 274 RRA 276


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 275 QKPLPSNMSSDTHQGTNQYLFDISK-LSMSIFVNFLF 382
           Q  + S+MS+DT   +NQ L D  K L   +F++F F
Sbjct: 663 QSLILSSMSADTSNFSNQELVDFDKYLVELLFLSFAF 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,197
Number of Sequences: 5004
Number of extensions: 51780
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)