Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1031
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    49   4e-06
11_01_0535 + 4234282-4235082                                           29   3.3  
06_03_1077 + 27417255-27417386,27417504-27417557,27417637-274178...    29   4.4  
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    28   5.9  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    28   5.9  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 26/51 (50%)
 Frame = -2

Query: 667 NFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKK 515
           N V+C NYT E   WL F I T+     +F       M  WA+GKHR  KK
Sbjct: 261 NIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTNWALGKHRRLKK 311


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 667 NFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKG 491
           + V+CPNY  E   WL + ++     A  F       +   A  +   Y  +F D YP  
Sbjct: 198 DLVACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYPAS 257

Query: 490 RKA 482
           RKA
Sbjct: 258 RKA 260


>06_03_1077 +
           27417255-27417386,27417504-27417557,27417637-27417801,
           27418131-27418496
          Length = 238

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 312 WVSDDILEGSG---FCLFWYATVWCGNNK*DYYNRTG 211
           WV D    G     F + W   +W  + + DYYN+TG
Sbjct: 43  WVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTG 79


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 499 GSLGIPSCSCDVYRWPK 549
           G +G+ +C C++Y WP+
Sbjct: 23  GRIGVGACGCEMYVWPR 39


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 318 PWWVSDDILEGSGFCLFWYATVWCGNNK 235
           PWW++   LEGSG    W    W   +K
Sbjct: 35  PWWLTGHDLEGSGCVWEWGLHPWLPKSK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,704
Number of Sequences: 37544
Number of extensions: 293510
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)