BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG1031 (668 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31014| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 6e-12 SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_20798| Best HMM Match : DUF827 (HMM E-Value=0.85) 30 2.0 SB_18823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 >SB_31014| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 42 Score = 68.1 bits (159), Expect = 6e-12 Identities = 27/34 (79%), Positives = 30/34 (88%) Frame = -2 Query: 583 LFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRKA 482 LF AGFYQM VWA+GKHRNYKKEFPDYP+ R+A Sbjct: 3 LFTLAGFYQMTVWALGKHRNYKKEFPDYPRRRRA 36 >SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 682 Score = 29.9 bits (64), Expect = 2.0 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 494 FGVVWEFLLVVAMFTDG-PNGHLIEACRSE 580 FGV +F+ V+ DG P G++I+ CRSE Sbjct: 244 FGVGDDFIQKVSRIVDGFPRGYIIKQCRSE 273 >SB_20798| Best HMM Match : DUF827 (HMM E-Value=0.85) Length = 329 Score = 29.9 bits (64), Expect = 2.0 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 494 FGVVWEFLLVVAMFTDG-PNGHLIEACRSE 580 FGV +F+ V+ DG P G++I+ CRSE Sbjct: 268 FGVGDDFIQKVSRIVDGSPRGYIIKQCRSE 297 >SB_18823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 187 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 587 GSVRCGRLLSDGRLGHR*TSQLQEGIPRLPQRP 489 G RCG D RLGH ++ G P + +RP Sbjct: 46 GPARCGTKRKDKRLGHARSNSCSPGDPLVLERP 78 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,228,029 Number of Sequences: 59808 Number of extensions: 358508 Number of successful extensions: 895 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 895 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1729817375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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