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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1031
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31014| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   6e-12
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_20798| Best HMM Match : DUF827 (HMM E-Value=0.85)                   30   2.0  
SB_18823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_31014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = -2

Query: 583 LFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRKA 482
           LF  AGFYQM VWA+GKHRNYKKEFPDYP+ R+A
Sbjct: 3   LFTLAGFYQMTVWALGKHRNYKKEFPDYPRRRRA 36


>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 494 FGVVWEFLLVVAMFTDG-PNGHLIEACRSE 580
           FGV  +F+  V+   DG P G++I+ CRSE
Sbjct: 244 FGVGDDFIQKVSRIVDGFPRGYIIKQCRSE 273


>SB_20798| Best HMM Match : DUF827 (HMM E-Value=0.85)
          Length = 329

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 494 FGVVWEFLLVVAMFTDG-PNGHLIEACRSE 580
           FGV  +F+  V+   DG P G++I+ CRSE
Sbjct: 268 FGVGDDFIQKVSRIVDGSPRGYIIKQCRSE 297


>SB_18823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 587 GSVRCGRLLSDGRLGHR*TSQLQEGIPRLPQRP 489
           G  RCG    D RLGH  ++    G P + +RP
Sbjct: 46  GPARCGTKRKDKRLGHARSNSCSPGDPLVLERP 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,029
Number of Sequences: 59808
Number of extensions: 358508
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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