Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1030
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   7e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   8e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   5e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   2.6  
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)          29   3.4  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   7.9  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = +1

Query: 154 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 169 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 169 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 169 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 169 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +1

Query: 172 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 172 RTSAKAFAKGVFINQERKLEVRRRLDT 252
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           R+T+  ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 VKFLDRRKTNISESICQRCFHQSRTKV 227
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           R+T+  ++  + VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 VKFLDRRKTNISESICQRCFHQSRTKV 227
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 KFLDRRKTNISESICQRCFHQSRTKV 227
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 VKFLDRRKTNISESICQRCFHQSRTKV 227
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +1

Query: 169 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 273
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 VKFLDRRKTNISESICQRCFHQSRTKV 227
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 480 CQSFRCPGLVRFPELSQIKPQ-APLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 304
           C S +CPG V +P +    P+ AP    P R++     L   SPRSP++  SR  P E +
Sbjct: 343 CASGKCPGCVYYPGMVPRSPRDAP--KEP-REYASPPPLPSKSPRSPRTSESRSPPREEM 399


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 469  PVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 362
            P S PG  S      A  STPG A+ SIP + S +T
Sbjct: 1015 PSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050


>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
          Length = 858

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 349 PGGVWLQS*NLKELTEGHHQEWSLRLNLTQ---LGKSHQARTPEGLTD*QLFLDSVGGGA 519
           P   W+ + NLK  + G    WSL   L+    +G  H    P+ LTD  L + S+  GA
Sbjct: 475 PDDSWVSTSNLKTASPGEQYSWSLFRALSHMLCIGYGHY--PPQNLTDLWLTVCSMTAGA 532


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 86  QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 196
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 368 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 276
           C+   PG  +   PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 456 LVRFPELSQIKPQAPLL--VVPFRQFL*VSALQPYSPRSPKS 337
           L R   LS + P +  +  VVPFR  +  + L P+ P SPKS
Sbjct: 39  LHRLESLSILSPASAAVEDVVPFRGDVFAAGLVPHPPDSPKS 80


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 335 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 246
           W+PG CPP  C+    +L +  TV +  +S
Sbjct: 80  WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 359 TPPGV-QNLWFPGSCPPSHCSNVGG 288
           +P GV +N W PGS   S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,854,278
Number of Sequences: 59808
Number of extensions: 476622
Number of successful extensions: 1114
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)