Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    30   0.30 
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   2.1  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.8  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    23   6.3  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   6.4  

>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 363 FGEFSELQREDFLPVLAASRSDKPEQLA 446
           FGE SE  RED+L  L     D  EQ A
Sbjct: 78  FGEMSEFHREDYLDFLKRVTPDNAEQFA 105


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 361 GLESLVNYSVKIFCRYLLHHDLISLNNWLLPW 456
           G  S   Y+V  FCR  +  D      W L W
Sbjct: 479 GAPSFAAYAVLAFCRLFITRDKFPKGRWSLGW 510


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 513 FNEWFPTWSREEQDRFVTKI--SEIDSEFG 596
           +  WF  WSR+++D F  K+  S  D+++G
Sbjct: 219 YYNWFVEWSRDKKDWFGLKMVFSHNDTQYG 248


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 578 FRYFSDKSVLLFPRPSWKPFIE*F 507
           FRY  D+ +++F R SW    E F
Sbjct: 237 FRYSHDQKIMIFDRLSWADSFERF 260


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 358 NGLESLVNYSVKIFCRYLLHHDLISLNNWLL 450
           +G + LVN + K+FC YL+      ++N  L
Sbjct: 876 DGHKKLVNPNTKVFCLYLVSFSYSIISNLFL 906


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 22.6 bits (46), Expect(2) = 6.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 195 FYLQFRRWLFVGTYCC 148
           FY +F  WLF  T  C
Sbjct: 347 FYYRFSSWLFHQTLAC 362



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -1

Query: 369 LQTIVKGIAIELQRLGLAQTSLGLISEAQFFICNF*TPAFY 247
           LQ+ ++ +  E + L    ++   +   ++F CN    +FY
Sbjct: 308 LQSNIRNVGYEKKNLYYISSAFSNLLHCRYFNCNDRLRSFY 348


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 272 ATFKRLLFINIPHLLPTRPDAYFDFAFICS 183
           +TF+RL  +N P++L T   A+F    +CS
Sbjct: 280 STFQRL--VNFPNVLVTSHQAFFTTEALCS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,314
Number of Sequences: 5004
Number of extensions: 45861
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)