Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    30   1.2  
06_01_0912 - 7036420-7037503,7037599-7037819                           30   1.6  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    28   5.0  

>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
 Frame = +3

Query: 102  QLIIYLIVSSWRQKHNSNRYLR----KATYETANKSKI-KISVRTGRQ*MRDIYKKQAFK 266
            Q+ I L+V+ WR   +++ YL+      TY+ A + ++ +  +R  R   RD    QA K
Sbjct: 839  QMDIKLLVTQWRCHRDNSNYLKLKRAALTYQCAWRRRVARRELRQLRMAARD---TQALK 895

Query: 267  SCR*KTEPRI--LTPRMSAQGLT 329
              + K E R+  LT R  A  LT
Sbjct: 896  VAKEKLEERVEELTNRYGATALT 918


>06_01_0912 - 7036420-7037503,7037599-7037819
          Length = 434

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 436 SGLSDRDAASTGKKSSRCSSLNSPNHCKRYRN*ASEVRPCADILGVNIRGSVFYL 272
           SG+ +R +A+     S    + +P H +RY   A  V+P  D +G N R    YL
Sbjct: 73  SGVEERSSAAASCDYSVGRWVRAPGHARRYNGTACNVKPEQDCVG-NGRPETGYL 126


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +1

Query: 367 ESLVNYSVKIFCRYLLHHDLISLNNWLLPWQI*LVKINRSAYFSVESNYSMNGFQLGLGK 546
           +SL +Y+  I   Y LH D ++ ++WL  + I  V     ++FS ES+  +   ++  GK
Sbjct: 585 DSLWDYT-DIVMDYALHQDKVNKHSWLQYFDI--VFTGSRSFFSEESHVELFDVEIETGK 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,074
Number of Sequences: 37544
Number of extensions: 254671
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)