Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)                  58   4e-09
SB_25828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_36780| Best HMM Match : GST_C (HMM E-Value=0.88)                    28   6.6  

>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
          Length = 326

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +3

Query: 339 QLRYLLQWFGEFSELQREDFLPVLAASRSDKPE-QLAATMANMTCQDKPVSLFQCRIKLF 515
           ++R L+ WF  ++  QR  F+ ++      +    L   + +MT QDK +  F+C++++F
Sbjct: 7   RMRTLVSWFDAWTPYQRVSFMDLMVTKVVPRHVCSLYNALESMTLQDKRLDTFECQLRMF 66

Query: 516 NEWFPTWSREEQDRFVTKISEIDSE 590
           ++WF  WS  +++ FV ++ ++D E
Sbjct: 67  SKWFAEWSDTQRNIFVDELEKVDYE 91



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 327 TSEAQLRYLLQWFGEFSELQREDFLPVL 410
           T E QLR   +WF E+S+ QR  F+  L
Sbjct: 58  TFECQLRMFSKWFAEWSDTQRNIFVDEL 85


>SB_25828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 252 FYKYPSFTAYPS*RLF*FCFYLQFRRWL 169
           FY +P+F A+ S   F  CFYL+ + W+
Sbjct: 436 FY-WPAFQAFESRETFVICFYLKNKDWI 462


>SB_36780| Best HMM Match : GST_C (HMM E-Value=0.88)
          Length = 153

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 355 YNGLESLVNYSVKIFCRYLLHHDLISLNNWLLPW 456
           +N L S   +S+  F     HHDL++ N  +  W
Sbjct: 111 FNNLSSTDGFSLDKFPEIKAHHDLVAANEGIKAW 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,266
Number of Sequences: 59808
Number of extensions: 316058
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)