Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    28   4.4  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       27   7.7  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    27   7.7  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    27   7.7  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    27   7.7  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    27   7.7  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   7.7  

>AF025452-3|AAB70939.2|  198|Caenorhabditis elegans Hypothetical
           protein B0454.5 protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 201 FCFYLQFRRWLFVGTYCCCVFVATK 127
           F F+  F  WLF+  +CCCV    K
Sbjct: 176 FLFFSIF--WLFMSVFCCCVLTFVK 198


>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = -2

Query: 191 ICSFVGGFS*VPIAVVFLSPRRYNEINYELLFISN 87
           ICS++  F  + + ++    + +NE +Y+++F++N
Sbjct: 81  ICSYLLNFGTLAVRIISSYSKCFNESSYQMIFLNN 115


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +3

Query: 345 RYLLQWFGEFSELQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEW 524
           RY      E+ +     F  VL   +   P      + +  C++  V  F+C ++ + E 
Sbjct: 618 RYTCMATNEYGQASTSAFFRVLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEP 677

Query: 525 FPTWSREEQ 551
              W  ++Q
Sbjct: 678 ELVWLVDDQ 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,080
Number of Sequences: 27780
Number of extensions: 246397
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)