Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 382 YSVKIFCRYLLHHDLISLNNWL 447
           Y V+ FCR  +H  + S+  WL
Sbjct: 29  YLVRAFCRNCIHPTVFSVLFWL 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 382 YSVKIFCRYLLHHDLISLNNWL 447
           Y V+ FCR  +H  + S+  WL
Sbjct: 477 YLVRAFCRNCIHPTVFSVLFWL 498


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 476 ILTSHICHGSSQLFRLIRS*CSKYRQKI 393
           IL++ ICHG+    RL     S Y + I
Sbjct: 9   ILSARICHGNPDAKRLYDDLLSNYNRLI 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 459 NMTCQDKPVSLFQCRIKLFNEWFP 530
           N TC   P  +F+   K+   WFP
Sbjct: 133 NGTCLYVPPGIFKSTCKIDITWFP 156


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 174 WLFVGTY 154
           WLFVGTY
Sbjct: 39  WLFVGTY 45


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 355 YNGLESLVNYSVKIFCRYLLHH 420
           YN  +   NY V I  + +LHH
Sbjct: 110 YNNADG--NYEVTIMTKAILHH 129


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 528 PTWSREEQDRFVTKISEIDSE 590
           P + REE    +TKI++I+ +
Sbjct: 172 PLFEREEIKNVLTKINKIEEQ 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,348
Number of Sequences: 438
Number of extensions: 3177
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)