Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1029
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati...    28   4.1  
At5g28960.1 68418.m03583 hypothetical protein                          28   5.4  
At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]
          Length = 759

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 513 FNEWFPTWSREEQDRFVTK 569
           FN+ FP + +EE +RF+TK
Sbjct: 576 FNKQFPGYKKEEVERFITK 594


>At5g28960.1 68418.m03583 hypothetical protein 
          Length = 457

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 381 LQREDFLPVLAASRSDKPEQLAATMANMTCQDKPVSLFQCRIKLFNEWFPTW--SREEQD 554
           L  EDFL  L  ++SD P   A  + N     +       RI   N+ FPTW    +EQ+
Sbjct: 32  LNNEDFLKKLGMNKSDVPN--APHLENCEVISRVRERLDTRIA--NQSFPTWITGGDEQN 87

Query: 555 RFVTKI 572
             +T+I
Sbjct: 88  YPLTRI 93


>At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 468 KSYLPW*QPIVQAYQIVMQQVPAK--NLHAVVH*TLQTIVKGIAIE 337
           KSY PW         +++ QV AK  NLHA+ +   Q I KG+ IE
Sbjct: 211 KSYKPW-------LYLLLMQVYAKDDNLHAMENFIDQAITKGLQIE 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,785,711
Number of Sequences: 28952
Number of extensions: 222769
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)