Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1028
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   2.4  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    26   5.5  

>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 262 MFTYVHVSSRLVAK*LTMFTVNYIVIFAFRSFI*RTFPKRNVI*Y*TRK-SLILHFHMC- 435
           +F  VH++S       T+F V YIV      +I +TFP    +   T   S+I+  H C 
Sbjct: 128 LFDDVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTFPLGKFVGLVTFSWSVIVFLHCCA 187

Query: 436 FNISYIISIYY 468
           +N   +I++ +
Sbjct: 188 YNYGGLIALRF 198


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 126 GRVASLQYKNKEKAISVCSFVKLEEI 203
           G+VA +QY N+E ++++   V+ E++
Sbjct: 30  GKVAVVQYSNRETSVTIGESVRDEDV 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,754
Number of Sequences: 5004
Number of extensions: 55603
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)