Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1028
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     29   2.5  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    29   3.3  
07_01_0328 - 2291696-2291951,2292462-2293708                           29   4.3  
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779...    29   4.3  

>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 483 FNHTTIVYRYYVGNIKTHMKMQNQALPCLVLNDISLRKGSLNKRPKRKYDDIV 325
           F H+ +VY   V +  +H++++ + + C +L    + K S + R  R+Y  +V
Sbjct: 203 FEHSLLVYLPAVHHNPSHIRIKLRVILCYILYQCDMEKESWHSRWGREYLSMV 255


>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
            13166756-13170655
          Length = 1415

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 255  EMYVHVCSRELTAGCQITHNVHC 323
            E+YV  CS EL   C+ T NV C
Sbjct: 1323 ELYVSSCSAELKEQCKKTKNVRC 1345


>07_01_0328 - 2291696-2291951,2292462-2293708
          Length = 500

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 408 LPCLVLNDISLRKGSLNKRPKRKYDDIV 325
           LPCL L  +S R G ++ RP+ + ++I+
Sbjct: 48  LPCLPLRALSSRAGEVDPRPRPRPEEII 75


>02_05_0444 - 29073740-29073844,29074417-29074725,29077910-29077981,
            29078541-29078633,29078825-29078982,29079247-29079415,
            29080204-29081241,29081632-29081759,29081926-29081985,
            29082033-29083077
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -1

Query: 540  IDFLTDCELLN*ANT*SCVFNHTTIVYRYYVGNIKTHMKMQN-QALPCLVLNDI----SL 376
            + FL D   +N A T +C   H T+   Y V +  T  K +      C++ N+     +L
Sbjct: 875  VGFLGDSRRMNVAITRAC--RHVTVGPPYIVISSNTVDKDKYCPQRKCIIWNEEVAGGNL 932

Query: 375  RKGSLNKRPKRKYD 334
            RKGS  +RP R+ D
Sbjct: 933  RKGSTGERPPRRLD 946


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,134
Number of Sequences: 37544
Number of extensions: 301478
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)