Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1028
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)                 29   4.4  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             28   5.9  

>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
          Length = 285

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 211 ISHISSSLTKLQTEMAFSLFLY*RLATRPRFASETLNFIINN 86
           + H+S   TKL    + SL  Y  L    +F+ E L  I++N
Sbjct: 166 VQHVSKRSTKLWPNASISLLRYRHLQVAAKFSREILFSIVHN 207


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 441 IKTHMKMQNQALPCLVLNDISLRKGSLNKRPKRKYDDIVYSEHCELF 301
           +  ++   ++  P L+L+   L    L+K+PKR+ +D+V    CE F
Sbjct: 165 LPANLSPMSEPEPQLLLDGHLLSSAPLSKKPKRRLEDVV--SWCEAF 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,695
Number of Sequences: 59808
Number of extensions: 385729
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)