Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1027
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.2  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.9  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   6.7  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   8.9  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 152 VKFNKSGRKIFSLMNLTHVTIVYLTRAKYLFKKVLLNSL 36
           + F K   ++F   N  + TI+Y TR K    + LLNSL
Sbjct: 344 LSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSL 382


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 415 QNLTRRSSRPPGMRCGSRGFRKLSHLPGPDPGHTRRP 305
           +N TR+S +P   +  SRG RK       DP     P
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAP 189


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 443 FVDEQVRGHPELDAEV*PSSGYAVRIEGVPQVKPSS 336
           +  EQV  HP + A       Y VRI+GV  VKP S
Sbjct: 141 YAAEQVCHHPPISAYFYLCPEYKVRIDGV--VKPRS 174


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 599 VDMGGWHFWGAVTG 558
           +D G W+FWG   G
Sbjct: 109 IDEGNWYFWGIFDG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,330
Number of Sequences: 5004
Number of extensions: 53230
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)