Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1027
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754...    29   3.0  
09_02_0236 - 6131072-6131639,6132047-6132180                           29   4.0  
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856...    28   5.2  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    27   9.2  
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    27   9.2  

>06_01_0974 +
           7541771-7542553,7542666-7542795,7543098-7543645,
           7544482-7544864,7546670-7546766
          Length = 646

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 232 QMRLVKSALRRYARNWRSVPRQTISVCACAQDQAPEDGLTCGTPSIRTAYPEDG*TSASS 411
           ++++V+ ++ R    W+ +P     VC+     +P+      T S  T    DG   A S
Sbjct: 261 KVKIVRESMNRMIEAWKEIPDMDEEVCSSDVPPSPQS----QTRSSSTDSASDGRYPADS 316

Query: 412 SGCPLTCSSTNRRGISST 465
            G   +  S  RR +S T
Sbjct: 317 LGSN-SVQSVRRRNLSPT 333


>09_02_0236 - 6131072-6131639,6132047-6132180
          Length = 233

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 291 RHRSPISRIPSQGTLDQSHLGPPRFP 214
           RH +P++R P+   LD+  L P R P
Sbjct: 32  RHHAPVARDPAHCRLDEGRLRPSRAP 57


>09_06_0365 -
           22582467-22583524,22584407-22584641,22585474-22585684,
           22585775-22585848,22585943-22586092
          Length = 575

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +3

Query: 216 EILVDPNAIGQECLEKVCEKLEI--GAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGG 389
           EIL   +  G E L++V E+LE    + A+     +  G G  + +  +   D     GG
Sbjct: 140 EILAAQDDGGGEALDRVYERLEAIDASTAEKRAAEILFGLGFNKHMQAKKTCD---FSGG 196

Query: 390 ---RLDL-RVKFWVPPHLLINEPTRH 455
              R+ L R  F  P  LL++EPT H
Sbjct: 197 WRMRIALARALFMNPTILLLDEPTNH 222


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 230 VHQDFQDHRIRLTD*PHFGQHF-ERKYVKFNKSGRKIF 120
           +H   +D   +L D  HFG+H   R  +K ++  RK+F
Sbjct: 328 IHNLAEDEARKLFDKQHFGKHHTTRSILKLDEEMRKVF 365


>04_04_1073 -
           30606472-30606515,30606897-30606988,30607152-30607243,
           30607362-30607469,30607614-30607748,30607826-30607871,
           30608320-30608420,30608512-30608649,30608721-30608819,
           30608920-30609036,30609941-30610102,30610271-30610330,
           30611120-30611216,30611238-30611296,30611364-30611480,
           30611922-30612020,30612115-30612180,30612405-30612542,
           30612659-30612742,30612820-30612892,30612937-30612992,
           30613074-30613182,30613253-30613335,30613406-30613489,
           30613679-30613750,30613827-30613904,30613984-30614067,
           30614142-30614212,30614497-30614566,30614866-30614955,
           30615046-30615177,30615250-30615350,30615634-30615691,
           30615762-30615878,30617981-30618133
          Length = 1094

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 312 RVCPGSGPGRWLNLRNPLDPHRIPG-GRLDLRVKFWVPPHLLINEPTRHQFYLHAK 476
           R   G G G W ++ +  DP  IP  G     +K W    L++N   R ++ L  K
Sbjct: 15  RSSSGGGGGSWGSIGSAADPFDIPAKGAPVESLKKWRQAALVLNASRRFRYTLDLK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,172
Number of Sequences: 37544
Number of extensions: 394358
Number of successful extensions: 1075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)