Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1027
(624 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.26
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.4
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 4.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 5.6
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 7.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 7.4
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 21 7.4
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 26.2 bits (55), Expect = 0.26
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 318 TRADRNSLPRHRSPISRIPSQGTLDQSH 235
+R+ S+PR SR+PSQG +H
Sbjct: 1773 SRSGSQSMPRQNGRYSRVPSQGGGSGTH 1800
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 447 TRHQFYLHAKLDLTEGRLVVAD 512
T+H+ +L T+GRLV+ +
Sbjct: 183 TKHRLTGETRLSATKGRLVITE 204
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 209 DLGNLGGPKCDWSRV 253
DLG GG + WSRV
Sbjct: 379 DLGKEGGLEAQWSRV 393
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 4.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Frame = -2
Query: 245 TNRIWVHQDFQDHRIR 198
T +W+ ++QDH+ +
Sbjct: 68 TTNVWLEHEWQDHKFQ 83
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 285 RSPISRIPSQGTLDQSHLGP 226
R+P+ R+ + D+S+ GP
Sbjct: 1338 RTPVPRLAQDSSEDESYRGP 1357
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLR-SRQEDRRLHRASGDR 562
+C R SR EDR +R G+R
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGER 251
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.4 bits (43), Expect = 7.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 3 LPQRIRDKHFTERI 44
+P +++KH T+RI
Sbjct: 117 VPHELKEKHLTQRI 130
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,457
Number of Sequences: 438
Number of extensions: 3743
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -