Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1027
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53320.1 68416.m05883 expressed protein 31 0.82
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi... 28 4.4
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 28 5.8
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 27 7.7
At5g60790.1 68418.m07627 ABC transporter family protein similar ... 27 7.7
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 27 7.7
At2g36220.1 68415.m04446 expressed protein 27 7.7
At1g02990.2 68414.m00269 expressed protein similar to mature-par... 27 7.7
At1g02990.1 68414.m00270 expressed protein similar to mature-par... 27 7.7
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 406 TRRSSRPPGMRCGSRGFRKLSHLPGPDPGHTRRPK*SASAP----ISNFSHTFSRHS 248
+R SS+P R SRG +P T +PK S+S P IS++S SR S
Sbjct: 354 SRLSSQPLANRSTSRGIMGQPRIPPQQTNKTSKPKLSSSVPTAGSISDYSSESSRAS 410
>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1064
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 150 YVFSFEMLTKMWLVSQPNSVILEILVDPNAIGQECLEKVC---EKLEIGAEADYFGLRVC 320
YV +MLT+ L+S+ I E+ + P+A+ L C + +EIG A + L +
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELE 891
Query: 321 P 323
P
Sbjct: 892 P 892
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 357 NPLDPHRIPGGRLDLRVKFW-VPPHLLINEPTRHQ 458
NP+D + G LD +V+ W +P H +++ H+
Sbjct: 517 NPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHE 551
>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 324 GSGPGRWLNLRNPLDP 371
G GPG WLN+R +P
Sbjct: 73 GGGPGNWLNVRQTTEP 88
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 141 IKFYVFSFEMLTKMWLVSQPNSVILEILVDPNAIGQECLEKVC---EKLEIGAEADYFGL 311
I+ Y ++L + L+ + I E+ + PNA+ L K C + +E+G E +
Sbjct: 384 IEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILI 443
Query: 312 RVCPGSGPGRWLNLRN 359
+ P G GR+++ N
Sbjct: 444 AIDPYHG-GRYVHKAN 458
>At5g60790.1 68418.m07627 ABC transporter family protein similar to
ABC transporter homolog PnATH GI:7573600 from [Populus
nigra]
Length = 595
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 213 LEILVDPNAIGQECLEKVCEKLE-IGAE-ADYFGLRVCPGSGPGRWLNLRNPLDPHRIPG 386
+EILV + G E L+ + E+L+ + AE A+ + G G + + + D G
Sbjct: 159 VEILVQQDDGGGERLQSIYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKD---FSG 215
Query: 387 G---RLDL-RVKFWVPPHLLINEPTRH 455
G R+ L R F +P LL++EPT H
Sbjct: 216 GWRMRIALARALFIMPTILLLDEPTNH 242
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 361 GFRKLSHLPGPDPGHTRRPK*SASAPISNFSHTFSRH 251
GF + P GH RP SA PISN + + H
Sbjct: 58 GFSLHARRPNAHGGHGSRPNSSALQPISNKAQKLTSH 94
>At2g36220.1 68415.m04446 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 497 TCSGRLRSRQE-DRRLHRASGDR 562
+C GR+RSR+E RR+HR R
Sbjct: 153 SCIGRVRSRRERSRRMHRQKSSR 175
>At1g02990.2 68414.m00269 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1238
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = -3
Query: 412 NLTRRSSRPPG--MRCGSRGFRKLSHLPGPDPGHTRRPK*SASAPISNFSHTFSRHS*PI 239
+++ +S+PP + F K SH+ PD H K S+SAP ++ + F I
Sbjct: 85 SISGSASKPPASDVLVKLNKFVKSSHIGTPDSKHMSDAKTSSSAPSNHKTLRFR-----I 139
Query: 238 AFGSTKISKITELG*LTNHILVNISNENT*NLINQV 131
GS+ +S + + T L + + + N +++V
Sbjct: 140 KVGSSDLSSLKNVSTFTKEGLNMLPSASRVNCLSEV 175
>At1g02990.1 68414.m00270 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1069
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = -3
Query: 412 NLTRRSSRPPG--MRCGSRGFRKLSHLPGPDPGHTRRPK*SASAPISNFSHTFSRHS*PI 239
+++ +S+PP + F K SH+ PD H K S+SAP ++ + F I
Sbjct: 85 SISGSASKPPASDVLVKLNKFVKSSHIGTPDSKHMSDAKTSSSAPSNHKTLRFR-----I 139
Query: 238 AFGSTKISKITELG*LTNHILVNISNENT*NLINQV 131
GS+ +S + + T L + + + N +++V
Sbjct: 140 KVGSSDLSSLKNVSTFTKEGLNMLPSASRVNCLSEV 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,005
Number of Sequences: 28952
Number of extensions: 294449
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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