Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1026
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    31   0.44 
05_07_0107 - 27730730-27730831,27730922-27730997,27731213-277313...    27   5.4  
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106...    27   7.2  
03_05_1148 + 30748787-30748835,30748930-30749000,30749261-307493...    27   9.5  
03_03_0262 + 15968884-15969687                                         27   9.5  

>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 217 NDKSSIVATCSRGRSFC*AGRTKWCCCCNPWC 312
           +D S IV    R R  C   R +WCC C  WC
Sbjct: 19  SDSSGIVG---RKRRRCDLIRERWCCLCPVWC 47


>05_07_0107 -
           27730730-27730831,27730922-27730997,27731213-27731340,
           27731635-27731830,27731918-27732146,27732387-27732563,
           27733019-27733094
          Length = 327

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 202 TTNNHNDKSSIVATCSRGRSFC*AGRTKWCCCCNPWC 312
           T +  ND +  V TC R    C    TK   C  P C
Sbjct: 89  TLDQSNDDNLAVVTCQRQPEHCETQMTKEVACPRPAC 125


>04_01_0102 +
           1060539-1060657,1060752-1060904,1061478-1061728,
           1061959-1062141,1062248-1062395,1062679-1062850,
           1062971-1063105,1063210-1063356
          Length = 435

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 155 SLLRTIGIFKSSSVDKPPTTI-MIRAPLWQLAQEAGPFVRLAGLSGAAAV 301
           +LL+  GI    +V  PP  + M  APL      A   + +AGLSG   V
Sbjct: 339 ALLKDHGILAIPTVPGPPPKVGMEAAPLENFRARAFSLLSIAGLSGFCQV 388


>03_05_1148 +
           30748787-30748835,30748930-30749000,30749261-30749322,
           30749470-30749569
          Length = 93

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 269 RLAGLSGAAAVILGAMGAHRTFPETEA 349
           ++A +SG AA+ LG  GAH   P+  A
Sbjct: 11  KVAAISGVAALGLGTYGAHMFRPKNPA 37


>03_03_0262 + 15968884-15969687
          Length = 267

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +2

Query: 131 NTVTEGTMSLLRTIGIFKSSSVDKPPTTIMIRAPLWQLAQEAGPFVRLAGLSGAAAV--- 301
           N +  G+   +RT G   ++    PP++   + P +     AGP   +A +  AA +   
Sbjct: 162 NVLFFGSQDAVRTGGAAAATPPPPPPSSHHQQQPAFPPQPSAGPIAGVAAVVEAARIAAL 221

Query: 302 --ILGAMGAHRTFPETEAKDD 358
             +LG  GA    P   A+ D
Sbjct: 222 RRLLGCGGATPPPPPAPAQGD 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,449
Number of Sequences: 37544
Number of extensions: 195753
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)