Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1026
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)                       28   3.2  
SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      27   7.4  
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)                    27   9.7  

>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
          Length = 602

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 148 SLRYRINHQCIHPINHTFKLIYNFNMRTEIRVNLVFDKF 32
           SL+YR+  QC+H  +   K ++N N+      N  +D +
Sbjct: 25  SLQYRVCKQCLHVTHEQQKCVFNGNIMMCKYSNCTYDGY 63


>SB_54060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 350 KDDLKKIFETANRFHFLHTLALVTVPLCRRPY 445
           + + KK+   ++ FHF + LA+  +P+C   Y
Sbjct: 75  ESEYKKVHNYSSMFHFSYFLAVFRLPVCTPAY 106


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 185 SSSVDKPPTTIMIRAPLWQLAQEAGPFVRLAGLSGAAAVILGAMGAH 325
           S++ D  P      A  ++   E G F  +  +SGAAA++LG +  H
Sbjct: 330 SNTADAEPEHCCCDADYYE-DSEYGSFDPVGFVSGAAAIVLGVLAIH 375


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +2

Query: 200 KPPTTIMIRAPLWQLAQEAGPFVRLAGLSGAAAVILGAMGAHRTFPETEAK 352
           +PP +  I+   + L QEA P V LA  S AA   LG         ETE+K
Sbjct: 258 RPPKSEPIQGETYDLVQEAAPPVALASQSEAA---LGDEFYDTAEEETESK 305


>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
          Length = 515

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 447 IYGLLH-RGTVTKARVCRKWNLLAVSNIFFKS 355
           I+G L  +  +T   VCRKW+  ++  + +KS
Sbjct: 36  IFGFLTPKEVLTAGEVCRKWHRASMDEVLWKS 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,987
Number of Sequences: 59808
Number of extensions: 219310
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)