Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1026
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04900.1 68415.m00509 expressed protein                             49   1e-06
At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein ...    31   0.49 
At4g23390.1 68417.m03372 expressed protein   contains Pfam profi...    28   2.6  

>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/62 (40%), Positives = 39/62 (62%)
 Frame = +2

Query: 269 RLAGLSGAAAVILGAMGAHRTFPETEAKDDLKKIFETANRFHFLHTLALVTVPLCRRPYI 448
           ++A +SG AA+ LG  GAH   PE  +    K++++TA+ +H +HT ALV+ P  + P I
Sbjct: 25  KVAAISGMAALGLGTYGAHVFKPENPS---YKQVWQTASLYHLVHTAALVSAPSTKYPNI 81

Query: 449 AG 454
            G
Sbjct: 82  FG 83


>At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein low
           similarity to SP|P03958 Adenosine deaminase (EC 3.5.4.4)
           (Adenosine aminohydrolase) {Mus musculus}; contains Pfam
           profile PF00962: Adenosine/AMP deaminase
          Length = 355

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 242 LAQEAGPFVRLAGLSGAAAVILGAMGAHRTFPETEAKDDLKKIFETANRFH 394
           L+ E    VR  GLS +    L       TF E E K  L+ IF++A+  H
Sbjct: 304 LSNEYALAVRSLGLSKSETFALARAAIDATFAEDEVKQQLRFIFDSASPEH 354


>At4g23390.1 68417.m03372 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 401

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 272 LAGLSGAAAVILGAMGAHRTFPETEAKDDLKKIFETANR 388
           L  LS  A +++G   +H+T P  E K+++KK+    N+
Sbjct: 10  LLTLSTIALILVGE--SHKTIPSKEEKEEMKKLLTYLNK 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,678
Number of Sequences: 28952
Number of extensions: 159120
Number of successful extensions: 353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)