Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1024
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    29   0.57 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   1.3  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    27   1.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   4.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   5.3  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   7.0  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   7.0  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.2  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 523 LNTRTYKYNRKIHFGM*RYKLAASAQHHIYI*KK 422
           LNT+ Y+Y  +I F    YK  +S   + Y+ K+
Sbjct: 223 LNTKLYRYKEQIGFSSWTYKCTSSIDGNAYVLKR 256


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 486 ILECNAINWPLLHSTI-YIFKKRVRVLMYARKKLYFIFIKFISFF 355
           + E +A+ WPLL   + + +++ ++V       +++  I  ++FF
Sbjct: 541 VYESSALTWPLLLGPLRFFYEQHLQVFFMGNPFVWYSVISLVAFF 585


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -2

Query: 272 RINSVILGTVRKVLLRLYSDSPRLSYVGHIVMSDLVG 162
           +I+SVIL   R++ L+++ ++ +L+Y   I +S  +G
Sbjct: 112 KIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 168 SGQLHSVKFVSRCARIVK-FHSHQFFITRLKKY 73
           +G+L +   +    R VK FH+HQ+F    KKY
Sbjct: 132 TGKLLTELHLRETVRDVKWFHNHQYFAVAQKKY 164


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 432 IYIWCCAEAANL*RYIPK 485
           +Y++CCA A  +  YI K
Sbjct: 66  VYVFCCAHAGQIREYIEK 83


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 RNLVLASLNIAAGELSEPYRELPNL 268
           R+LV    N A  +LSE  RELP +
Sbjct: 485 RDLVTTIFNNAVNQLSEKDRELPQI 509


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 453 LHSTIYIFKKRVRVLMYARKKLYFIFIKFISFFHLN 346
           L +TI++FKK VR+ +     + + +I F+ F  LN
Sbjct: 385 LSTTIHLFKKIVRITL--STFISYTWIPFLLFIFLN 418


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 303 TRILASLFLTSYKFGNSRYGSESSP 229
           T+  AS     Y   N RYGSE  P
Sbjct: 87  TKWFASTLKNQYAARNERYGSEKKP 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,188
Number of Sequences: 5004
Number of extensions: 36696
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)