Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1024
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 29 2.3
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 29 3.1
02_04_0257 + 21334560-21334566,21334809-21335326 28 4.0
07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838... 28 5.3
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 27 7.1
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 27 9.3
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857... 27 9.3
01_01_0552 - 4065623-4065698,4066133-4066218 27 9.3
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = -1
Query: 351 LNFNQFEKKSITQHPQTRILASLFLTSYKFGNSRYGSESSPAAIFRLAKTKLRRSYCNER 172
L + + P R ++L + F +S + + + P+A+F + + + S
Sbjct: 289 LTYVDLSNNNFMSSPAPRWFSTLTSLTTLFMDSDHLTGTIPSALFSFPQLQ-QISLAKNS 347
Query: 171 FSGQLHSVKFVSRCARIVKFHSHQFF 94
FSG+L+ +S R+V ++Q F
Sbjct: 348 FSGELNMSSNISSLLRVVNLTNNQIF 373
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = -1
Query: 459 PLLHSTIYIFKKRVRVLMYARKKLYFIFIKFISFFHLNFNQFEKKSITQHPQTRILASLF 280
PL+ T ++ RV + K Y+ ++ F+ N + +TQHP L ++F
Sbjct: 277 PLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIF 336
Query: 279 LTSYKFGNSRYGSESSPAAIF 217
+YK N YG + A ++
Sbjct: 337 SFNYKSLNP-YGVINDTAMLW 356
>02_04_0257 + 21334560-21334566,21334809-21335326
Length = 174
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 457 RPIYSVTFQNEFSCCTC 507
+P Y FQ EFSCC C
Sbjct: 48 QPSYPSRFQTEFSCCYC 64
>07_01_0993 -
8377720-8377800,8379924-8380406,8380622-8381132,
8381174-8381586
Length = 495
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 249 YGSESSPAAIFRLAKTKLRRSYCNERFSGQL 157
YG SSP A R T R S C SG+L
Sbjct: 109 YGRASSPTAYCRSPSTSPRSSACRRSHSGRL 139
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 245 VRKVLLRLYSDSPRLSYVGHIVMSDLVGNFILLNLCHGA 129
+ + + ++Y D+ R+S V + S LVGN+ ++ GA
Sbjct: 182 IYRTVPQVYDDTERISLVSSFMASILVGNYASIDETDGA 220
>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 366 ISFFHLNFNQFEKKSITQHPQTRILASLFLTSYKFGNSRYGSESSPAAIFRLAKTKLRRS 187
IS F ++ + K+ + H + LAS S GN YG E A F L + R +
Sbjct: 791 ISAFGVSKKLLDPKATSLHSSPQALASHSSRSRLNGNFAYGGECMSADRF-LQDSTQRSN 849
Query: 186 YCNER--FSGQLHSVKFV-SRC 130
Y ++ +G L S+ + RC
Sbjct: 850 YSEQKVLVNGNLESLAHIWMRC 871
>11_05_0068 -
18782658-18782984,18784634-18784783,18784853-18785716,
18785877-18786005,18786112-18786188,18786507-18786607,
18786772-18786896
Length = 590
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -1
Query: 333 EKKSITQHPQTRILASLFLTSYKFGNSR-----YGSESSPAAIFRLAKTKLRRSYCNERF 169
E +S+ +H + L + +T + G S Y E+SPA + +L RS C F
Sbjct: 498 ELRSLEKHCPHKNLKLVKMTGFSAGRSSLELALYFVENSPALELLILDHRLDRSVCRITF 557
Query: 168 SGQL 157
G L
Sbjct: 558 GGDL 561
>01_01_0552 - 4065623-4065698,4066133-4066218
Length = 53
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 271 RCQEKGCQYACLRMLC 318
R ++KGC YACL LC
Sbjct: 19 RHEDKGCLYACLFTLC 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,507
Number of Sequences: 37544
Number of extensions: 195803
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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