Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1024
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              29   3.1  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -1

Query: 480 ECNAINWPLLHSTIYIFKKRVRVLMYARKKLYFIFIKFISFFHLNFNQFEKKSITQHPQT 301
           +C AI +P  +   +I + R+ + +     LYF     + F +++ N F K  +  HP T
Sbjct: 114 QCVAITYPHRYKQ-WISRPRITICVVVIW-LYFSVFSVLHFVNIDQNTFLKADLALHP-T 170

Query: 300 RILASLFLT 274
            I   LF+T
Sbjct: 171 LITIILFIT 179


>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 260 VILGTVRKVLLRLYSDSPRLSYVGHIVMSDLVGNFILLN 144
           +I G+ R VLL + SDS RL  +G I  SD +  F++++
Sbjct: 744 IISGSGRLVLLGIISDSGRLVLLGIISDSDRLVLFVIIS 782


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 116 FTMRAHRDTNLTE*SCPLNR-SLQYDRRNLVLASLNIAAGELSEPYRELPNLYDVKKRD 289
           FT   H+ T +     P+N  +L   R   V+    +  GE S PYR LPN   V   D
Sbjct: 220 FTSEWHK-TQIIVAQHPVNSYTLSQFRDPFVILPTALYEGEKSNPYRHLPNYVTVPYSD 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,632
Number of Sequences: 59808
Number of extensions: 252359
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)