Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1024
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical
           protein ZK265.4 protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 357 FHLNFNQFEKKSI-TQHPQTRILASLFLTSY 268
           FHLNF   +KKS+  + PQT   +S F++ Y
Sbjct: 203 FHLNFEDSDKKSMKKESPQTPSTSSPFISEY 233


>Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical
           protein H36L18.1 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
 Frame = -1

Query: 360 FFHLNFNQFEKKSITQHPQTRILASLFLTSYKFGNSRYGSESS-PAAIFRLAKTK----- 199
           ++H +   +  KS+ Q    RI     L SY +  SRYG     P AI  + + +     
Sbjct: 283 YYHEDGKPYFFKSM-QRESYRIELFTILESYFWQYSRYGKHKLWPRAIVSIFENQVPIVS 341

Query: 198 -LRRS---YCNERFSGQLHSVKFVSRCARIVKFHSHQFFITRLKKYNFKKNK 55
            LR S   YC   F  +  S KF    +   K   + FFI+++K Y F  +K
Sbjct: 342 WLRVSITVYCKRHFFSR--SSKFTVGFS--FKSEKNIFFISQVKNYKFSVHK 389


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 183 CNERFSGQLHSVKFVSRCARIVKFHSHQFFITRLKKYNFK 64
           C++  S  L SV+ VS C      +S Q F  R+   NFK
Sbjct: 19  CSQVSSRALRSVRCVSPCGSYSSGNSKQSFQFRISANNFK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,647
Number of Sequences: 27780
Number of extensions: 200423
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)