Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1023
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 7e-14
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 61 7e-10
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 60 1e-09
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.66
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7) 30 1.5
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008) 29 2.7
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 29 3.5
SB_49865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_48337| Best HMM Match : zf-CCHC (HMM E-Value=9.3) 29 4.7
SB_35030| Best HMM Match : Peptidase_A16_N (HMM E-Value=4.3e-05) 29 4.7
SB_34577| Best HMM Match : zf-CCHC (HMM E-Value=9.3) 29 4.7
SB_26543| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0084) 29 4.7
SB_25439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_17795| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05) 29 4.7
SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_52621| Best HMM Match : Peptidase_A16_N (HMM E-Value=2.4e-05) 29 4.7
SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05) 29 4.7
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09) 28 6.2
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 8.1
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) 28 8.1
SB_22928| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00027) 28 8.1
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.1
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 8.1
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026) 28 8.1
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2) 28 8.1
>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 74.5 bits (175), Expect = 7e-14
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Frame = +3
Query: 144 AHTKSVEEVLKYFGTDPDKGLS--PDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLL 317
A T + +++ T +KG+S P+ I+ + +GPN +P + K+ W+ +++ D
Sbjct: 51 ASTGGLHGLVRKLHTSTEKGISGFPEDIENRKRVFGPNVIPPKPPKTFWEFLVDACKDTT 110
Query: 318 VKXXXXXXXXSFVLALFEEHE----DAFSAFVEPFVILLILIANAVVGVWQERNAESAIE 485
+ S +L +F E +A + +++ F IL+ + A+V + E
Sbjct: 111 LIILTVAAVVSLLLGIFAPEECGGSEANTGWIDGFAILIAVCIVALVTAVNDYQKEQQFR 170
Query: 486 ALK---EYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIR 656
L+ E E + + GD ++I EIV GD+ ++ GD +PAD + + S ++
Sbjct: 171 GLQSKIELEHKFTVIRNGD---AKEILNSEIVVGDLCQIKYGDLLPAD--GVVVQSNDLK 225
Query: 657 IDQSILTGES 686
+D+S LTGES
Sbjct: 226 VDESSLTGES 235
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/91 (31%), Positives = 55/91 (60%)
Frame = +3
Query: 414 ILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEV 593
+ +++ A +QE + +++ K P+ ++R K V+ A+++V GD++ V
Sbjct: 103 LTFVVVVTACFSYYQESKSSKIMDSFKNMVPQEATILRDGKKVVKN--AEQVVIGDIIFV 160
Query: 594 SVGDKIPADIRLIKIYSTTIRIDQSILTGES 686
++GD++PADIR+I+ S ++D S LTGES
Sbjct: 161 AIGDRVPADIRVIE--SKGFKVDNSSLTGES 189
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/92 (33%), Positives = 52/92 (56%)
Frame = +3
Query: 411 VILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVE 590
V+ ++I + +QE + +E+ K P+ V+R G + + A+ +V GDVV
Sbjct: 134 VLAFVVIVTGIFSYYQESKSSKIMESFKNLVPQEANVLRS--GGRKTVGAENLVIGDVVS 191
Query: 591 VSVGDKIPADIRLIKIYSTTIRIDQSILTGES 686
V GD++P DIR+++ S ++D S LTGES
Sbjct: 192 VKGGDRLPGDIRILECKS--FKVDNSSLTGES 221
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 354 VLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAES 476
VLALFEE ED +AFVEP VIL+ILI NA++GVWQ N S
Sbjct: 191 VLALFEEGEDQTTAFVEPIVILVILILNAIIGVWQGTNIAS 231
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 52.8 bits (121), Expect = 3e-07
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +3
Query: 144 AHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVK 323
A +VEEVLK F TD +GLS D+I+R + +G NE E K++W+ L+Q ++V
Sbjct: 37 ASAMAVEEVLKQFNTDQSRGLSNDEIERRRMLHGWNEFDVVEEKALWKKYLDQAILIVV- 95
Query: 324 XXXXXXXXSFVLAL-FEEHEDAFSAFVEPF--VILLILIANAVVGVWQERN 467
+FV A+ E E +F+ +EP L I N+ GV RN
Sbjct: 96 ------TVAFVQAVDLEIDESSFTGEMEPASKTTLPIPAVNSGSGVSARRN 140
>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/84 (22%), Positives = 43/84 (51%)
Frame = +3
Query: 381 DAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRA 560
+AF + ++ +L AV ++++R ++ K+ + +V + +
Sbjct: 81 NAFGKEIAMLPLIFVLAVTAVKDLFEDRRRYNSD---KKVNNTICQVYSSASASYIATKW 137
Query: 561 KEIVPGDVVEVSVGDKIPADIRLI 632
K++V GD++++S + IPADI L+
Sbjct: 138 KDVVVGDIIKLSSNEIIPADILLL 161
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -2
Query: 496 SFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILT 317
+F S +A + ++P A A+ I+++ STK A + + N+N+I AA S +T
Sbjct: 97 AFMNSSQIAAAVFMNSPKIAAAVSITEVFMNSTKIAAAVNITEVFMNSNKIAAAVS--IT 154
Query: 316 KRSSNCSK 293
+ NC+K
Sbjct: 155 EVFMNCTK 162
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 201 GLSPDQIKRNQEKYGPNELPTE-EGKSIWQLVLEQFDDLLVK 323
G D+ KR+ K P E+PTE K W+LV +D+ V+
Sbjct: 385 GEMADEFKRDYFKMPPEEVPTEIVEKEFWRLVCSMDEDVQVE 426
>SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7)
Length = 323
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N MED + +EEV PD+ +P + +N+ K GPN
Sbjct: 253 LSITRGKSHKNWVMEDMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 302
>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
Length = 659
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 546 QKIRAKEIVPGDVVEV-SVGDKIPADIRLIKIYSTTIRIDQSILTGES 686
++I++ ++VPGDV+ + + G + D LI S +++S+LTGES
Sbjct: 173 EEIQSTDLVPGDVIVIPAQGATMHCDAALI---SGNCIVNESMLTGES 217
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 539 WSTKNPCQGNCSRGRC*SVRW 601
+ST NP Q C GRC S +W
Sbjct: 224 YSTCNPSQFKCDNGRCISSKW 244
>SB_49865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_48337| Best HMM Match : zf-CCHC (HMM E-Value=9.3)
Length = 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_35030| Best HMM Match : Peptidase_A16_N (HMM E-Value=4.3e-05)
Length = 353
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 264 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 313
>SB_34577| Best HMM Match : zf-CCHC (HMM E-Value=9.3)
Length = 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_26543| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0084)
Length = 202
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 113 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 162
>SB_25439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +1
Query: 538 LEYKKSVPRKLFPGTLLKCPLVTRSLLTFALSKSTPPQSVS 660
+EY ++ PR+ +P + + L+ + L+++ L K+ P + +
Sbjct: 1 MEYPRNDPRQSYPELVHQAQLLAKDLISYRLGKNPKPPNAN 41
>SB_17795| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
Length = 272
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 183 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 232
>SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.7 bits (61), Expect = 4.7
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 357 LALFEEHEDAFSAFVEPFV-ILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGD 533
L +FE+ E++ +V PF + L+L+A + W + A E EP M K +
Sbjct: 78 LIVFEKTEESAVDYVTPFFAVCLLLLATCLAYAWDKDVA--------EIEPAMPKE-QVA 128
Query: 534 KSGVQKIRAKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 686
+ A E+V E + KIP + + K TTI + +TGE+
Sbjct: 129 MATCHLEEAVELVASITEEKTRAHKIPKN-KKTKAKKTTIPVPCRGITGEA 178
>SB_52621| Best HMM Match : Peptidase_A16_N (HMM E-Value=2.4e-05)
Length = 332
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 243 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 292
>SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
Length = 668
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 264 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 313
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -2
Query: 508 SGSYSFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANS 329
S S S ++ S+ S + +++ + S S ++SS SS+ +N+N ++NS
Sbjct: 126 SSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNS 185
Query: 328 KILTKRSSNCSKTN 287
+ SSN S ++
Sbjct: 186 SSNSNSSSNSSSSS 199
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 457 RKETPNLPSKL*KNTNLKWVKS*EETNLEYKKSVPRKLFPGTLLK------CPLVTRSLL 618
+K+ L K N + K + + T+ E + PRK +P L+ CP T S
Sbjct: 500 KKKNSKLAEKRDGNPSSKMDLTIDPTDDETPRVRPRKRYPQVCLQNTPEITCPKDTGSDD 559
Query: 619 TFALSKSTPPQSVS 660
+S++TPP SVS
Sbjct: 560 EVIVSENTPPSSVS 573
>SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)
Length = 569
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 459 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVSVGD--KIPADIRL 629
E + +E LKE++ + K+I GD + V + ++ ++ ++ D K P IR+
Sbjct: 43 EETKKETVEQLKEFKESLDKIIAGDMTLVDHLNGMQL----AIQAAISDAFKTPEVIRM 97
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 504 PEMGKVIRGDKSGVQKIRAK 563
P++ KVIRG K+G +K++ K
Sbjct: 714 PKLSKVIRGPKAGKEKVKKK 733
>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
Length = 604
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 415 ITKGST-KAENASSCSSNKANTNEIIAANSKILTKRSSNCSKT 290
+TKGST +S+C K++T ++ +++ LT+ S C T
Sbjct: 132 LTKGSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTRNYSTCDLT 174
>SB_22928| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00027)
Length = 206
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 251
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 129 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKPGPN 178
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 402 EPFVILLILI-ANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPG 578
+P V+ L+ I A + W R+ +S + + EP MG++ +++ ++++ P
Sbjct: 670 QPGVVTLLPINATEALEQWNSRSNQSHADGRNKTEPRMGRLKEVEQNAMEQMIRNGQGPN 729
Query: 579 DV 584
DV
Sbjct: 730 DV 731
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 504 PEMGKVIRGDKSGVQKIRAK 563
P++ KVIRG K+G +K++ K
Sbjct: 17 PKLSKVIRGPKAGKEKVKKK 36
>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
Length = 766
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 490 KASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTN 350
K M+DSA + A +I KITK ST A +CSS+ + T+
Sbjct: 67 KRCMSDSARNASDFKAEHKAYKIPKITKSSTPAR--PNCSSHSSKTS 111
>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
Length = 610
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -2
Query: 403 STKAENASSCSSNKANTNEIIAANSKILTKRSSNCSKTNCH 281
+ A+NA++ ++ AN N A N+ ++N + TN +
Sbjct: 464 ANNADNANNANATNANANNANATNANANNANANNANATNAN 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,744,647
Number of Sequences: 59808
Number of extensions: 394891
Number of successful extensions: 1191
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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