Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1020
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0349 - 3082700-3083407                                           30   1.5  
03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965     29   2.7  
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954...    29   2.7  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   4.6  
08_01_0350 - 3087631-3088461                                           28   6.1  
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...    27   8.1  

>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 299 AKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 415
           A+L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 104 AELSVKFFAILVCFLLAFLLNVQSIRYYSHTGLLVNVPL 142


>03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965
          Length = 408

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 398 KVKLPLEILLMVFNSIAFQNTIFTWVRNTIYRNNMYYHTDISSNVFSG 541
           K+KL   IL + +N + F +    W+RN      +Y    ISS+VF G
Sbjct: 232 KLKLQRRILQLGYNFL-FTDVDIVWLRNPFKHVAVYADMAISSDVFFG 278


>01_07_0299 +
           42594363-42594424,42594516-42594798,42595185-42595409,
           42596395-42596592,42596871-42597325,42597824-42597962,
           42598035-42598113,42598686-42598924,42599058-42599362,
           42599449-42599560,42599640-42599804,42599933-42600071,
           42600111-42600219,42600733-42600823,42600940-42601064,
           42601148-42601297,42601383-42601455,42601630-42601810,
           42601888-42602046,42602939-42603085,42603176-42603220,
           42603305-42603382,42603565-42603719,42603875-42603927,
           42604012-42604090,42604271-42604357
          Length = 1310

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 359 TAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRNTIYRNNMY 505
           TA  HRL    GY  ++     +  F  +  +N +  ++++TIY+ + Y
Sbjct: 119 TAVGHRLAKVQGYLFRVAFLRRVPTFTRLIIENLLLCFLQSTIYQTSKY 167


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 300 QNWLHRFLLLCYSS 341
           Q+W H+ LLLCYSS
Sbjct: 855 QSWRHQMLLLCYSS 868


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 305 LATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 415
           L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 126 LSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162


>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 145 FICFIH*IRRHFSNLDFNFIYLL*VI*FYNTKYLLKKFCS 26
           F+C +  +R H  NLD  F        F +  Y L++FCS
Sbjct: 159 FVCVVWYLRSHLFNLDLQFF-------FNHVVYRLQQFCS 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,345
Number of Sequences: 37544
Number of extensions: 271224
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)