Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1020
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               61   7e-10
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   2.7  
SB_35141| Best HMM Match : p450 (HMM E-Value=0)                        28   4.8  
SB_24986| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)                    27   8.3  
SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)                     27   8.3  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 23/44 (52%), Positives = 33/44 (75%)
 Frame = +2

Query: 350 FGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRN 481
           +G+T GAHRLW+H  +K K PL +++M+ NS+A QN IF W R+
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRD 61


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 230 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 328
           MN  +F YL++ G+ GL+  F +A ++  VF +
Sbjct: 284 MNGKKFKYLYVTGVAGLFWGFLAAAVSCCVFYV 316


>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 425 LMVFNSIAFQNTIFTWVRNTIYRNNMYYHTDISSNVFS 538
           L +F  + F +  F   R  I+ NNM Y  D+S  + S
Sbjct: 293 LRMFLMLPFASVFFKIFRFLIHNNNMKYFIDLSKEILS 330


>SB_24986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 470 WVRNTIYRNNMYYHTDISSNVFS 538
           W R TIY++N YY+ + +S V S
Sbjct: 9   WNRETIYKDNKYYYYEAASIVES 31


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 538 RKYIGANVGMIIH--IVPINGIAYPCENGVLKSNTVEDH 428
           R Y+    G  +   IV +   A PCE G LK + + DH
Sbjct: 111 RCYVAQKTGETVDEFIVRLRQQAEPCEFGALKDSLIRDH 149


>SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 230 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 328
           MN   F YL++ G+ GL+  F +  ++  VF +
Sbjct: 126 MNGTEFKYLYVTGVAGLFWGFLATAVSCCVFYV 158


>SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 230 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAI 328
           MN   F YL++ G+ GL+  F +  ++  VF +
Sbjct: 126 MNGTEFKYLYVTGVAGLFWGFLATAVSCCVFYV 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,367
Number of Sequences: 59808
Number of extensions: 336585
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)