Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1019
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    30   0.31 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   3.8  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   5.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   6.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   6.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   6.7  

>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 29  LEGQAKGVKTCKFSSIKIDLE---KEIGGYEFTCDIDIEGKYKVFSESPLIKNLLGGTTV 199
           +EG + G +  K S +K+ L+   KE+  + F+ +     KY+V     + KN L   T 
Sbjct: 57  IEGHSSGFEALK-SLLKVCLKLGVKEVSAFTFSIENFKRSKYEVDMLMEIAKNSLTQITA 115

Query: 200 HGE 208
           HG+
Sbjct: 116 HGD 118


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 510 PKNFEV*L*KISMALSKKLLPKVSMTNFQFSFKNVVTS-LLASCS 379
           P+N+   +  IS   ++KL+  +S+ N  ++ K  +TS LL  C+
Sbjct: 53  PRNYHKFVDTISRKPTRKLVHHISLNNVSYASKASITSRLLRRCA 97


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +3

Query: 309 IVKLSTIIKFWERQSFMLTISSWVNKKL 392
           ++ LS ++   E ++F LTI +W+++++
Sbjct: 403 MITLSLVLTESELEAFKLTIKAWIHRRM 430


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 136 REV*SVFRKPSYKELVGR---HDRPWRRKWKSSIRKTTNQYEISRV 264
           R++  +   PS K  V      DRP RR+    IRK   QY ++ +
Sbjct: 350 RKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 198 TVVPPNKFFIRGLSENTLYFPSISISQVNSYPPISFSK 85
           T +P N + ++  +   LY     IS+  SY P+  +K
Sbjct: 356 TQLPENTYVLKEETSMVLYDEQCKISESPSYSPVKLAK 393


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +2

Query: 71  SIKIDLEKEIGGY--EFTCDIDIEGKY---KVFSESPLIKNLLGGTTVHGEGNGKVQLEK 235
           S+K+++E E+ G+    + + DIE +        + P +     G   H  GN   QL  
Sbjct: 53  SVKMEVE-EVNGHVDSSSTETDIEMQVIQQPTIPKKPPVSAHRRGPRKH-RGNANSQLNL 110

Query: 236 LQISMKFPVYA--QKRDDGEIYMKCD 307
                + P+Y   QK DDG   + CD
Sbjct: 111 STADHQRPLYCICQKPDDGSWMLGCD 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,557
Number of Sequences: 5004
Number of extensions: 57905
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)